1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' |
...cttagcctacttattttacttgtgcgaagattgacgtgttcgcttacaacttacattcatgattctgtttcttaatcatgtttcctcgctgtatatgcagAATAAAACTGTCTCTGTTTTTGAAACCAACATACGCATTCTTGGGGGTCTGCTATCAGCTCACCTGATTGCCAGTGATTATGCAACT
species | Oryza sativa |
transcript | LOC_Os01g56670.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATTTGATGCTGCCGTGGAGTGGGTTGGTAAGAATGTCCGCTTTGATATT AATAAAACTGTCTCTGTTTTTGAAACCAACATACGCATTCTTGGGGGTCTGEST: gi|88452946|gb|CI574493.1|CI574493
genomic: GATTTGATGCTGCCGTGGAGTGGGTTGGTAAGAATGTCCGCTTTGATATTgtaagtaaac ... gtatatgcagAATAAAACTGTCTCTGTTTTTGAAACCAACATACGCATTCTTGGGGGTCTG
EST: GATTTGATGCTGCCGTGGAGTGGGTTGGTAAGAATGTCCGCTTTGATATT AATAAAACTGTCTCTGTTTTTGAAACEST: gi|88404616|gb|CI581052.1|CI581052
genomic: GATTTGATGCTGCCGTGGAGTGGGTTGGTAAGAATGTCCGCTTTGATATTgtaagtaaac ... gtatatgcagAATAAAACTGTCTCTGTTTTTGAAAC
EST: GATTTGATGCTGCCGTGGAGTGGGTTGGTAAGAATGTCCGCTTTGATATT AATAAAACTGTCTCTGTT
genomic: GATTTGATGCTGCCGTGGAGTGGGTTGGTAAGAATGTCCGCTTTGATATTgtaagtaaac ... gtatatgcagAATAAAACTGTCTCTGTT
acaacttacattcatgattctgtttcttaatcatgtttcctcgctgtatatgcagAATAAAACTGTCTCTGTTTTTGAAACCAACATACGCATTCTTGGGGGTCTGCTATCAGCTCACCTGATTGCCAGTGATTATGCAACT
tttcttaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttagcctacttattttacttgtgcgaagattgacgtgttcgcttacaacttacattcatgattctgtttcttaatcatgtttcctcgctgtatatgcagAATAAAACTGTCTCTGTTTTTGAAACCAACATACGCATTCTTGGGGGTCTGCTATCAGCTCACCTGATTGCCAGTGATTATGCAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA