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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gatgggtttacaggaagaaaaaaccattgactattttttacagcaaacttatgatgatattcccagttgtattttacctgtgattatttgctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAG

Basic information

species Oryza sativa
transcript LOC_Os01g55540.1
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G094712_T02 (Zea mays), 3'ss of exon 3
---gatgggtttacaggaagaaaaaaccattgactattttttacagcaaacttatgatgatattcccagttgtattttacctgtgattatttgctt-tgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAG
     || || |||| |      |  | |   |    ||  |   | ||  ||||||   || |   || |||||||||       || | | ||| |  ||||||||||||| ||||||||  | || ||||| || ||||| || |||||||||||||| ||||||||||| ||||| ||||||||
tctcgtgtgtgtacaagccactgatgcgaaaaaactgttggtgtgg-aagtttatga---tacttgaagctgtattttagacacatttttcttcttatttctagGTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAAGCTGAGCGCTAAGCTTATCTTTGGCGCTGACAG

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G094712_T04 (Zea mays), 3'ss of exon 3
---gatgggtttacaggaagaaaaaaccattgactattttttacagcaaacttatgatgatattcccagttgtattttacctgtgattatttgctt-tgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAG----------------
     || || |||| |      |  | |   |    ||  |   | ||  ||||||   || |   || |||||||||       || | | ||| |  ||||||||||||| ||||||||  | || ||||| || ||||| || |||||||||||||| ||||||||||| ||||| ||||||||                
tctcgtgtgtgtacaagccactgatgcgaaaaaactgttggtgtgg-aagtttatga---tacttgaagctgtattttagacacatttttcttcttatttctagGTCACGTGTCAAGGAGTACCTACCAATCACCGGTCTGGCTGAATTCAATAAGCTGAGCGCTAAGCTTATCTTTGGCGCTGACAGGTATTCTCTGTTTGAC

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GLYMA06G08670.2 (Glycine max), 3'ss of exon 3
gatgggtttacaggaagaaaaaaccattgactattttttacagcaaacttatgatgatattcccagttgtattttacctgtgattatttgctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAG
| | |     ||  |  || | ||  |    |  || | |   |     |   || ||  ||  |  | | | | |  |    || |    | |    ||||||||    ||||| ||| | ||||||  ||| || || ||||| |||||  |||||||||||||||||||||| ||||||||
gttagtacctcactataaatatactttc--tttcttctcatttccgg--tgacattatgctctgaactttttatgatgttctgttctgcattattttcagGTCACGCAACAAGGAATATATTCCGATCGTTGGGCTTGCTGATTTTAATAAATTGAGTGCTAAGCTTATTTTTGGGGCTGACAG

upper sequence: LOC_Os01g55540.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv11s0016g03720.t01 (Vitis vinifera), 3'ss of exon 3
gatgggtttacaggaagaaaaaaccattgactattttttacagcaaacttatgatgatattcccagttgtattttacctgtgattatttgctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAG
           | |      ||||   ||    ||| ||   | |   |||  |||||      ||| ||  || | |  || || | ||| |    |||||| || || || |||||  | || ||   ||||||||| || ||||||||  |||| ||||| || |||||||||||||||||
---------gtaagctattcaaaca--tgggagtttctttttgtacgtttac-atgatg-----agtagttgttgatcactgctt-tgtgcatcttttagGTCCCGGGTCAAAGAGTACCTTCCCATTGTTGGACTGGCAGAGTTCAATAAATTGAGCGCTAAACTCATTTTTGGTGCTGACAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163928483|gb|EG711368.1|EG711368
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCCGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88721809|gb|CI743321.1|CI743321
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTAT
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTAT
EST: gi|88692382|gb|CI735957.1|CI735957
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88443684|gb|CI591909.1|CI591909
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88727471|gb|CI751126.1|CI751126
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88393311|gb|CI618199.1|CI618199
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88363866|gb|CI607176.1|CI607176
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88456042|gb|CI567758.1|CI567758
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATAACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88719267|gb|CI742777.1|CI742777
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88420940|gb|CI620258.1|CI620258
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|218495429|gb|FG949244.1|FG949244
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCC
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCC
EST: gi|58669037|gb|CK057723.1|CK057723
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|29660055|gb|CB656330.1|CB656330
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88732533|gb|CI755710.1|CI755710
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88351233|gb|CI623455.1|CI623455
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88362731|gb|CI608880.1|CI608880
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|58606260|gb|CK034293.1|CK034293
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88359643|gb|CI622333.1|CI622333
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88399381|gb|CI606002.1|CI606002
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88315748|gb|CI617221.1|CI617221
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTTGGCCGATTTCAATA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACT-GGCCGATTTCAATA
EST: gi|88316608|gb|CI622854.1|CI622854
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88420185|gb|CI621454.1|CI621454
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGC-GATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|29679665|gb|CB675940.1|CB675940
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88445128|gb|CI589606.1|CI589606
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATC
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATC
EST: gi|88392766|gb|CI623997.1|CI623997
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33678230|gb|CF306469.1|CF306469
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33795088|gb|CF323417.1|CF323417
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88314546|gb|CI606614.1|CI606614
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGC
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGC
EST: gi|58694708|gb|CK083395.1|CK083395
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|32948296|gb|BP184868.1|BP184868
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|44667509|gb|CR280943.1|CR280943
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|58656014|gb|CK044694.1|CK044694
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|58597339|gb|CK007867.1|CK007867
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|29639571|gb|CB644580.1|CB644580
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|58679081|gb|CK067768.1|CK067768
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88396724|gb|CI620057.1|CI620057
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88393104|gb|CI616588.1|CI616588
EST:     CTGGTGCTGAATGT-GTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88314884|gb|CI608343.1|CI608343
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAAAAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88358129|gb|CI605054.1|CI605054
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33795132|gb|CF323439.1|CF323439
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88364245|gb|CI612194.1|CI612194
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|3090541|gb|C93528.1|C93528
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTNGCCGATTT
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTT
EST: gi|88402208|gb|CI615051.1|CI615051
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTAAAGGAGTATTTGCCGATCACTGGACTGGGCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88415096|gb|CI583919.1|CI583919
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88314663|gb|CI606731.1|CI606731
EST:     -TGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATC
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATC
EST: gi|88423171|gb|CI613472.1|CI613472
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|2310287|gb|C26442.1|C26442
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|218490932|gb|FG946901.1|FG946901
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|58689993|gb|CK078680.1|CK078680
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|218483959|gb|FG947666.1|FG947666
EST:     TGGNTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: TGG-TGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|218486707|gb|FG945773.1|FG945773
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88730553|gb|CI754166.1|CI754166
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33794958|gb|CF323359.1|CF323359
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|218494538|gb|FG968928.1|FG968928
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88730774|gb|CI754387.1|CI754387
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|32948428|gb|BP185000.1|BP185000
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88696490|gb|CI740065.1|CI740065
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88725854|gb|CI747366.1|CI747366
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88304127|gb|CI599815.1|CI599815
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88400351|gb|CI593426.1|CI593426
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTTGGCCGATTTCAATA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACT-GGCCGATTTCAATA
EST: gi|88372424|gb|CI610747.1|CI610747
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAG
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAG
EST: gi|29658837|gb|CB655112.1|CB655112
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33793380|gb|CF322571.1|CF322571
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88362433|gb|CI623773.1|CI623773
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88719284|gb|CI742794.1|CI742794
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33678676|gb|CF306915.1|CF306915
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88759987|gb|CI769543.1|CI769543
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88365128|gb|CI616547.1|CI616547
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTAAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88316321|gb|CI621560.1|CI621560
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|58675206|gb|CK063893.1|CK063893
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|8527391|gb|AU092206.1|AU092206
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|86902328|gb|CI302359.1|CI302359
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88362758|gb|CI608907.1|CI608907
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88314688|gb|CI606756.1|CI606756
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         C
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactag-
EST: gi|88314688|gb|CI606756.1|CI606756
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         C
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactag-
EST: gi|88352116|gb|CI613767.1|CI613767
EST:     CTGGTGCTGAAAGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|5004347|gb|AU069496.1|AU069496
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33677846|gb|CF306085.1|CF306085
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88350927|gb|CI620587.1|CI620587
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|32948311|gb|BP184883.1|BP184883
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88393658|gb|CI619950.1|CI619950
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33796305|gb|CF324020.1|CF324020
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|569037|gb|D39886.1|D39886
EST:     CTNGTGCTGAATGTGGTCANGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTT
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTT
EST: gi|88362839|gb|CI614195.1|CI614195
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTT-AATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88695788|gb|CI737365.1|CI737365
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88729202|gb|CI752712.1|CI752712
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|58672429|gb|CK061115.1|CK061115
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|218478855|gb|FG949686.1|FG949686
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88724166|gb|CI749176.1|CI749176
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88730373|gb|CI753986.1|CI753986
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88721523|gb|CI744822.1|CI744822
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88326122|gb|CI651177.1|CI651177
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|10794714|gb|AU108680.1|AU108680
EST:     CTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTNCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88719191|gb|CI742701.1|CI742701
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88718527|gb|CI742037.1|CI742037
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88362380|gb|CI619555.1|CI619555
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88414790|gb|CI604148.1|CI604148
EST:     TGGGTGCTGAATGTGGTCCGGCGCGCTGAGCAGATGCTGATCCACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCGCTGGACTGGC
genomic: TGG-TGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGC
EST: gi|33794428|gb|CF323098.1|CF323098
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|88416045|gb|CI594157.1|CI594157
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGGTCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|33685641|gb|CF313880.1|CF313880
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
EST: gi|10931116|gb|AU161390.1|AU161390
EST:     CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCC                         GTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA
genomic: CTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 74 (upstream exon), 74 (downstream exon)
Score: 217

GAAGGGAAGCCCCTGGTGCTGAATGTGGTCAGGCGCGCTGAGCAGATGCTGATCAACAACCCgtaagtctga ... ctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAG




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 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttatgatgatattcccagttgtattttacctgtgattatttgctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAG
                                         tttgcttt  CT-rich tract
                     ttgtatttta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gatgggtttacaggaagaaaaaaccattgactattttttacagcaaacttatgatgatattcccagttgtattttacctgtgattatttgctttgactagGTCACGTGTTAAGGAGTATTTGCCGATCACTGGACTGGCCGATTTCAATAAGCTGAGTGCTAAGCTTATTTTTGGTGCTGACAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - gaaaaaa
- - - - - - - - - - - - - - - - - - - - cagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - atgatga