1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...tgaaataatgcttttctcatggccaactttgatttattaagacattaactcaataaaattatgctctcaaacattacgattttggagttttcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG
species | Oryza sativa |
transcript | LOC_Os01g55260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGAT CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCEST: gi|88733070|gb|CI756247.1|CI756247
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGC
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCCCGATGGGAATGCTGATGCGAT CCACAAGCCCCTCCTACCTTCGTTTGEST: gi|58675193|gb|CK063880.1|CK063880
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTG
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGAT CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCEST: gi|32948003|gb|BP184575.1|BP184575
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGC
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGAT CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCEST: gi|25802191|gb|CA758152.1|CA758152
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGC
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGAT CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATEST: gi|88380889|gb|CI634914.1|CI634914
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAAT
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGAT CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCEST: gi|88824884|gb|CI775449.1|CI775449
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGC
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGAT CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCEST: gi|88744126|gb|CI767486.1|CI767486
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGC
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGAT CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCEST: gi|88359857|gb|CI617768.1|CI617768
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGC
EST: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGAT CCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGC
genomic: CAGACGGAGGTGCGCGCCGCGGCGATTCGCGATGGGAATGCTGATGCGATgtgaggactc ... tcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGC
taactcaataaaattatgctctcaaacattacgattttggagttttcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG
cattaac putative branch site (score: 9)
ttttcttttgc putative PPT
aataaaattatgct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaaataatgcttttctcatggccaactttgatttattaagacattaactcaataaaattatgctctcaaacattacgattttggagttttcttttgcagCCAGAAGCCCCTCCTACCTTCGTTTGAGTCAGCTGAAATGCGTAATCTTGCAGAGACATTGTTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - aatgctt
- - - - - - - - -catggcc
- - - - - - - - - - - - - - - - - - - - - - - - - caataaa