1 5' 3' | 2 5' 3' | 3 5' 3' |
...taaatttgttccattactatgtgtcctcatttctgtcccagataactttgctgcatactgaacatttatttcttttgttttcgttatgttaatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGAGAGGAAAGCAGGCTGACTTTGTATTATGCATTGGTGATGACAGGTCGG
species | Oryza sativa |
transcript | LOC_Os01g54560.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAN GGAGTAAGCAAGGGAGTAGTAGCTGAGAEST: gi|88234859|gb|CI232710.1|CI232710
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGA
EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTGGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|87031848|gb|CI272549.1|CI272549
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: ATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|86869341|gb|CI339065.1|CI339065
genomic: ATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: GTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|86858429|gb|CI273035.1|CI273035
genomic: GTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|87037918|gb|CI192540.1|CI192540
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: GCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|87023217|gb|CI272045.1|CI272045
genomic: GCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: CCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|87040603|gb|CI195225.1|CI195225
genomic: CCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: TGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|86600818|gb|CI356575.1|CI356575
genomic: TGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|86858264|gb|CI271140.1|CI271140
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: TCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTATCTGAGAAGATACTCGTCTCAAAGAAGGAGEST: gi|87021398|gb|CI274005.1|CI274005
genomic: TCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: CCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|29630629|gb|CB635638.1|CB635638
genomic: CCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGEST: gi|87038409|gb|CI193031.1|CI193031
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
EST: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAG GGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
genomic: AACCTGTTTCTGTCAAAAGTGGCCAGTTCATTGTTGAAGTCAAACCTCAGgttagttcat ... aatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAG
ctttgctgcatactgaacatttatttcttttgttttcgttatgttaatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGAGAGGAAAGCAGGCTGACTTTGTATTATGCATTGGTGATGACAGGTCGG
tgttaat putative branch site (score: 3)
aacatttatttctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaatttgttccattactatgtgtcctcatttctgtcccagataactttgctgcatactgaacatttatttcttttgttttcgttatgttaatactgcagGGAGTAAGCAAGGGAGTAGTAGCTGAGAAGATACTCGTCTCAATGAAGGAGAGAGGAAAGCAGGCTGACTTTGTATTATGCATTGGTGATGACAGGTCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA