1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgcttctgatctcatttggcatgatgtatagaaagcacgagactgtttttaattcgatgtatcattgatctatcattgacattacacaacttggtgcagCATCGGCGCTTCTAGGATGAAGAATGAGTGCATGTCGTTCAGGGATAGTTGTGGCCAAGGAAATGTTGAAGG
species | Oryza sativa |
transcript | LOC_Os01g54050.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TTCAACAGGTGGGATACATATATGCAGCAACTAAAAGGCAGCTGTTCCAG CATCGGCGCTTCTAGGATGAAGAATGAGTGCATGTCGTTCAGGGATAGTTG
genomic: TTCAACAGGTGGGATACATATATGCAGCAACTAAAAGGCAGCTGTTCCAGgtagttcctg ... cttggtgcagCATCGGCGCTTCTAGGATGAAGAATGAGTGCATGTCGTTCAGGGATAGTTG
gtttttaattcgatgtatcattgatctatcattgacattacacaacttggtgcagCATCGGCGCTTCTAGGATGAAGAATGAGTGCATGTCGTTCAGGGATAGTTGTGGCCAAGGAAATGTTGAAGG
cattgac putative branch site (score: 13)
tatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgcttctgatctcatttggcatgatgtatagaaagcacgagactgtttttaattcgatgtatcattgatctatcattgacattacacaacttggtgcagCATCGGCGCTTCTAGGATGAAGAATGAGTGCATGTCGTTCAGGGATAGTTGTGGCCAAGGAAATGTTGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
-tgcttct
- - - - - - tcatttg
- - - - - - - - - - catgatg
- - - - - - - - - - - - - - atagaaag