1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...caagccatttctagcagcctagaacgctctgctttgatttgttctaattttctttcgttcctctcacatacaagctgttctcaattttcctctcatgcagGTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATCAAGAAATACTTGCATCAACCGATTCATTTTCTGATGCAAATCTTCTGGG
species | Oryza sativa |
transcript | LOC_Os01g53840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAG GTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATCEST: gi|8857856|gb|AU095174.1|AU095174
genomic: GAAACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAGgttagttcat ... tctcatgcagGTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATC
EST: GAA-CAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAG GTGGTTGGAATGGGCGTGTTTEST: gi|58661336|gb|CK050016.1|CK050016
genomic: GAAACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAGgttagttcat ... tctcatgcagGTG-TTGTAGTGGACGTGTTT
EST: GAAACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAG GTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATC
genomic: GAAACAATCAAGAACGGATGGCAGTGATCATCATATGAATACCCCAAAAGgttagttcat ... tctcatgcagGTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATC
aattttctttcgttcctctcacatacaagctgttctcaattttcctctcatgcagGTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATCAAGAAATACTTGCATCAACCGATTCATTTTCTGATGCAAATCTTCTGGG
ttctcaattttcctct CT-rich tract
tcaatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caagccatttctagcagcctagaacgctctgctttgatttgttctaattttctttcgttcctctcacatacaagctgttctcaattttcctctcatgcagGTGTTGTAGTGGACGTGTTTGATAGGGAGAAGCCCATTGTGTTTACCTATCAAGAAATACTTGCATCAACCGATTCATTTTCTGATGCAAATCTTCTGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
caagcca
- - - - - -tagcagc
- - - - - - - - - - - - - - ctgcttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgttc