1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cagtcaaagttccccacttccccacttaaaggataatgataccttccagctcaatcacagtaagttcatcgcctaatgcattacccttattctgattcagGTTTCCTACCACTCATGCAAATCGGTCTAGCAAACTACATTTATATTGATTCGGATCAGAAGCTCTAATTCTTCAATCCTCCAAATCTCAA
species | Oryza sativa |
transcript | LOC_Os01g53280.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGGCCGTTGCAACTGAAAGTTACTACTATTATTGTCTTTTAGCTCAAAG GTTTCCTACCACTCATGCAAATCGGTCTAGCAAACTACATTTATATTGATT
genomic: ATGGCCGTTGCAACTGAAAGTTACTACTATTATTGTCTTTTAGCTCAAAGgtgactcatg ... tctgattcagGTTTCCTACCACTCATGCAAATCGGTCTAGCAAACTACATTTATATTGATT
ccagctcaatcacagtaagttcatcgcctaatgcattacccttattctgattcagGTTTCCTACCACTCATGCAAATCGGTCTAGCAAACTACATTTATATTGATTCGGATCAGAAGCTCTAATTCTTCAATCCTCCAAATCTCAA
ttctgat putative branch site (score: 3)
cccttattct CT-rich tract
ttattct TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cagtcaaagttccccacttccccacttaaaggataatgataccttccagctcaatcacagtaagttcatcgcctaatgcattacccttattctgattcagGTTTCCTACCACTCATGCAAATCGGTCTAGCAAACTACATTTATATTGATTCGGATCAGAAGCTCTAATTCTTCAATCCTCCAAATCTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - -aaaggata
- - - - - - - - - - - - - - - - - - - - - - tccagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttcatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taatgca