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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgttctgcccgaatacactgttaaagaagcacctgcataaagataactgatattacggcattgttcactttgttgtgaaattgcagGGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG

Basic information

species Oryza sativa
transcript LOC_Os01g53060.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|38477210|gb|CF961343.1|CF961343
EST:     AGAACTTCCATCTAAATATCGGAATGATGCCCTTCCTACACTTCTTTTTG                         GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG
genomic: AGAACTTCCATCTAAATATCGGAATGATGCCCTTCCTACACTTCTTTTTGgtaagcgttc ... gaaattgcagGGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG
EST: gi|88956940|gb|CI009142.1|CI009142
EST:     CGGAATGATGCCCTTCCTACACTTCTTTTTG                         GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG
genomic: CGGAATGATGCCCTTCCTACACTTCTTTTTGgtaagcgttc ... gaaattgcagGGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG
EST: gi|25806625|gb|CA762586.1|CA762586
EST:     AGAGCTTCCATCTGAATATGGGAATAATG-CCTTCCTACACTTC-TTTTG                         GGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG
genomic: AGAACTTCCATCTAAATATCGGAATGATGCCCTTCCTACACTTCTTTTTGgtaagcgttc ... gaaattgcagGGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgcataaagataactgatattacggcattgttcactttgttgtgaaattgcagGGTTTAGATTTTGGATTCCTGTATCGATCATTAACTTTTG
             aactgat  putative branch site (score: 3)
 ataaagataa  TA-rich tract