1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...ctaagagaatgaatgtgtttgtggacatacattttgatgcagcatacatatatacagatgtcaaaactacttttttttcatcctttttatatttctgtagGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAATCCGCACAATTCTGCGAGGAATAATAGTAAAAAGAGACAAGGCAGTTAGA
species | Oryza sativa |
transcript | LOC_Os01g52790.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTG GTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAATEST: gi|33677581|gb|CF305820.1|CF305820
genomic: GCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTGgttggtactt ... atttctgtagGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAAT
EST: GCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTG GTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAATEST: gi|88347047|gb|CI631127.1|CI631127
genomic: GCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTGgttggtactt ... atttctgtagGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAAT
EST: GCTACACGCGTACCTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTG GTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAATEST: gi|88347108|gb|CI631188.1|CI631188
genomic: GCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTGgttggtactt ... atttctgtagGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAAT
EST: GCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTG GTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAAT
genomic: GCTAAACGCGTACTTAAAGCTTTTCAGAGAATCTTTATCCCAGGCTACTGgttggtactt ... atttctgtagGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAAT
acatatatacagatgtcaaaactacttttttttcatcctttttatatttctgtagGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAATCCGCACAATTCTGCGAGGAATAATAGTAAAAAGAGACAAGGCAGTTAGA
ctacttttttttcatc CT-rich tract
tacttttttttcatcc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctaagagaatgaatgtgtttgtggacatacattttgatgcagcatacatatatacagatgtcaaaactacttttttttcatcctttttatatttctgtagGTACTTACCAATCGAAAACAACAGAAGGATCAGGGAAATTGATCAAGAAATCCGCACAATTCTGCGAGGAATAATAGTAAAAAGAGACAAGGCAGTTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - atgaatg
- - - - - - - -tgtttgt
- - - - - - - - - - - - -catacat
- - - - - - - - - - - - - - - - - tgatgca
- - - - - - - - - - - - - - - - - - - - -gcataca