1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtatccttcacaaagtttatgtaatttgagctttggcgacttgaaaccattctactaatatccaagtcagcgcctgttatgttctttcttgactatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTGAGCGTTTTCAAGATTTGGGTTCACCTGAAACGCTGCAGTCTGAAGCACA
species | Oryza sativa |
transcript | LOC_Os01g52630.1 |
intron # | 3 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: TGAAGGTTCGCTCTGGTCATGGGGTTACAACATC- ----T---CTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTGEST: gi|29645077|gb|CB650084.1|CB650084
genomic: TGAAGGTTCGCTCTGGTCATGGGGTTACAACATCTgtatccttca ... tatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTG
EST: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCT ATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTGEST: gi|58654418|gb|CK043098.1|CK043098
genomic: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCTgtatccttca ... tatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTG
EST: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCT ATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTGEST: gi|58689937|gb|CK078624.1|CK078624
genomic: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCTgtatccttca ... tatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTG
EST: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCT ATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTGEST: gi|88424496|gb|CI608082.1|CI608082
genomic: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCTgtatccttca ... tatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTG
EST: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCT ATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTGEST: gi|58692504|gb|CK081191.1|CK081191
genomic: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCTgtatccttca ... tatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTG
EST: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCT ATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTG
genomic: ATGAAGGTTCGCTCTGGTCATGGGGTTACAACATCTgtatccttca ... tatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTG
attctactaatatccaagtcagcgcctgttatgttctttcttgactatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTGAGCGTTTTCAAGATTTGGGTTCACCTGAAACGCTGCAGTCTGAAGCACA
tttcttgac putative branch site
actatttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatccttcacaaagtttatgtaatttgagctttggcgacttgaaaccattctactaatatccaagtcagcgcctgttatgttctttcttgactatttaacggATGGTCAGCTTGGCTACGGGGAAGAGAATTCTCTTTTCCCATGTTTGGTTGAGCGTTTTCAAGATTTGGGTTCACCTGAAACGCTGCAGTCTGAAGCACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC