1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgagtatcctgctgtcaatgcttcaccagcaagtgctcaacagatcgaggctttccaacgttaatcagaataaacgaattctcgttgatgctcggaataacgaagctgatgctcgaccatttgaattgcttgcttttatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCACATCCAATGTTGTCTCTGGTGCAGTGTCAAGAAG
species | Oryza sativa |
transcript | LOC_Os01g52480.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCA ATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCAEST: gi|87021599|gb|CI275998.1|CI275998
genomic: AGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCAgtgagtatcc ... tatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCA
EST: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCA ATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCAEST: gi|86597874|gb|CI276660.1|CI276660
genomic: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCAgtgagtatcc ... tatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCA
EST: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCA ATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCAEST: gi|87007409|gb|CI279080.1|CI279080
genomic: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCAgtgagtatcc ... tatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCA
EST: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCA ATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCAEST: gi|86859243|gb|CI277122.1|CI277122
genomic: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCAgtgagtatcc ... tatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCA
EST: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCA ATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCAEST: gi|86522123|gb|CI162329.1|CI162329
genomic: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCAgtgagtatcc ... tatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCA
EST: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCA ATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCAEST: gi|86501629|gb|CI144262.1|CI144262
genomic: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCAgtgagtatcc ... tatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCA
EST: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCA ATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCA
genomic: CCTCGCCACCGTCCCAGGGGAGGTCATCCTGGCCTCGCTTGATGCTATCAgtgagtatcc ... tatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCA
tcggaataacgaagctgatgctcgaccatttgaattgcttgcttttatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCACATCCAATGTTGTCTCTGGTGCAGTGTCAAGAAG
cttgctttt CT-rich tract
atttgaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatcctgctgtcaatgcttcaccagcaagtgctcaacagatcgaggctttccaacgttaatcagaataaacgaattctcgttgatgctcggaataacgaagctgatgctcgaccatttgaattgcttgcttttatctggcagATAAAGTTATGGACGCGGTGGAGGCTGCTGAGAGGAGGTCACTCGCTGCCACATCCAATGTTGTCTCTGGTGCAGTGTCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG