1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...cttcgttttcttttggaagttatagaagaactgatcagataatatgtcccaggctttttgaagttatataatttgccattgttttggacctttggtgcagGCACGTAGGGCATTCCGTGCATTAAAAGGTATCATAAGACTCCAGGCACTGATCCGAGGACATCTTGTAAGGAGACAAGCTGCATCAACCCTTCGTGTGA
species | Oryza sativa |
transcript | LOC_Os01g51840.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCGAAGAGCTAGCTGCAGTGAAGGCACAAGCGGCCTTCCGAGGTTACCTG GCACGTAGGGCATTCCGTGCATTAAAAGGTATCATAAGACTCCAGGCACTG
genomic: GCGAAGAGCTAGCTGCAGTGAAGGCACAAGCGGCCTTCCGAGGTTACCTGgtaacacctt ... tttggtgcagGCACGTAGGGCATTCCGTGCATTAAAAGGTATCATAAGACTCCAGGCACTG
gtcccaggctttttgaagttatataatttgccattgttttggacctttggtgcagGCACGTAGGGCATTCCGTGCATTAAAAGGTATCATAAGACTCCAGGCACTGATCCGAGGACATCTTGTAAGGAGACAAGCTGCATCAACCCTTCGTGTGA
ccttt CT-rich tract
tttttgaagttatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttcgttttcttttggaagttatagaagaactgatcagataatatgtcccaggctttttgaagttatataatttgccattgttttggacctttggtgcagGCACGTAGGGCATTCCGTGCATTAAAAGGTATCATAAGACTCCAGGCACTGATCCGAGGACATCTTGTAAGGAGACAAGCTGCATCAACCCTTCGTGTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - tcttttg
- - - - - - - - - - - -agaagaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccatt