1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ggatatcaaattagctgtaatattgcatttccatctcatgtaacatcctgtaaattattgactaatttaattggcatgatgcttttccatttccttttagGCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTG
species | Oryza sativa |
transcript | LOC_Os01g51700.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGATGAGTTCCTCAACCAA GCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAGEST: gi|87035544|gb|CI190166.1|CI190166
genomic: ATGATGAGTTCCTCAACCAAgtaagttatt ... ttccttttagGCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAG
EST: ACAGGTCATTTGACACGCTCAACACATGGCATGATGAGTTCCTCAACCAA GCTAGCCCATCAGATCCCNAAACTTTTCCATTCATCTTACTTGGGAACAAGEST: gi|87035485|gb|CI190107.1|CI190107
genomic: ACAGGTCATTTGACACGCTCAACACATGGCATGATGAGTTCCTCAACCAAgtaagttatt ... ttccttttagGCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAG
EST: ACAGGTCATTTGACACGCTCAACACATGGCATGATGAGTTCCTCAACCAA GCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAG
genomic: ACAGGTCATTTGACACGCTCAACACATGGCATGATGAGTTCCTCAACCAAgtaagttatt ... ttccttttagGCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAG
tcctgtaaattattgactaatttaattggcatgatgcttttccatttccttttagGCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTG
tgcttttccatttcct CT-rich tract
taaattattgactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggatatcaaattagctgtaatattgcatttccatctcatgtaacatcctgtaaattattgactaatttaattggcatgatgcttttccatttccttttagGCTAGCCCATCAGATCCCAAAACTTTTCCATTCATCTTACTTGGGAACAAGATTGACGTAGATGGAGGGAAAAGCAGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG