1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtgactttgatcccttagcccttagcagctcttttgcagtgagaaaatagagtgactgttgtaatgttgtcactgtcatgattgcttaaattgtagATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTTTACAGAGGAGCAGATTGTTGTGTGCTCGTCTATGACGTCAATTCTAACA
species | Oryza sativa |
transcript | LOC_Os01g51700.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATTTCGTCACCAAGGAGGTCCTCATTGAAGATAGGCTCGTGACTCTGCAG ATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTTEST: gi|58598437|gb|CK008965.1|CK008965
genomic: ATTTCGTCACCAAGGAGGTCCTCATTGAAGATAGGCTCGTGACTCTGCAGgtgactttga ... taaattgtagATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTT
EST: ATTTCGTCACCAAGGAGGTCCTCATTGAAGATAGGCTCGTGACTCTGCAG ATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTTEST: gi|163925455|gb|EG711568.1|EG711568
genomic: ATTTCGTCACCAAGGAGGTCCTCATTGAAGATAGGCTCGTGACTCTGCAGgtgactttga ... taaattgtagATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTT
EST: ATTTCGTCACCAAGGAGGTCCTCATTGAAGATAGGCTCGTGACTCTGCAG ATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTTEST: gi|27576487|gb|CA999181.1|CA999181
genomic: ATTTCGTCACCAAGGAGGTCCTCATTGAAGATAGGCTCGTGACTCTGCAGgtgactttga ... taaattgtagATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTT
EST: ATTTCGTCACTAAGGAGGTCCTCATTGAAGATAGGCTCGTGACTCTGCAG ATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTT
genomic: ATTTCGTCACCAAGGAGGTCCTCATTGAAGATAGGCTCGTGACTCTGCAGgtgactttga ... taaattgtagATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTT
agaaaatagagtgactgttgtaatgttgtcactgtcatgattgcttaaattgtagATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTTTACAGAGGAGCAGATTGTTGTGTGCTCGTCTATGACGTCAATTCTAACA
ttaaattgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgactttgatcccttagcccttagcagctcttttgcagtgagaaaatagagtgactgttgtaatgttgtcactgtcatgattgcttaaattgtagATCTGGGACACTGCGGGGCAGGAGAGGTTCCAGAGTCTTGGTGTTGCGTTTTACAGAGGAGCAGATTGTTGTGTGCTCGTCTATGACGTCAATTCTAACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT