1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtccattttcagctgtcaagatgttattagtcatttttagcctttttggattgattttatcttttggacttattccctacttttctatatcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTCAAGGGTTCATCATGGGCTAACCCTAGCTCAATTCCTCTTATGGTGATCC
species | Oryza sativa |
transcript | LOC_Os01g51390.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAG GTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTCEST: gi|218485879|gb|FG950579.1|FG950579
genomic: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAGgtccattttc ... tcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTC
EST: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAG GTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTCEST: gi|25807053|gb|CA763014.1|CA763014
genomic: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAGgtccattttc ... tcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTC
EST: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAG GTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTCEST: gi|218481912|gb|FG956568.1|FG956568
genomic: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAGgtccattttc ... tcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTC
EST: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAG GTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTCEST: gi|396941466|gb|HO188675.1|HO188675
genomic: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAGgtccattttc ... tcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTC
EST: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAG GTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTCEST: gi|117220685|gb|CT852401.1|CT852401
genomic: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAGgtccattttc ... tcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTC
EST: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAG GTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTC
genomic: CTGTAGATCAACTTGTTGAAGCAAATCCAGCTATTTTTACTGGATCTGAGgtccattttc ... tcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTC
tttggattgattttatcttttggacttattccctacttttctatatcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTCAAGGGTTCATCATGGGCTAACCCTAGCTCAATTCCTCTTATGGTGATCC
gattgat putative branch site (score: 17)
tcatcctt putative PPT
attgattttatctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccattttcagctgtcaagatgttattagtcatttttagcctttttggattgattttatcttttggacttattccctacttttctatatcatccttagGTCCGTGTGGAGCAACCAGAGATGCCTCTAACGCACTTTGCAATTGCTTTCAAGGGTTCATCATGGGCTAACCCTAGCTCAATTCCTCTTATGGTGATCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA