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gtaaagcagagactggaccatatgctccagtacgtaggtagtgatagtctttcttcatgtaacttctggaagtttgacatctggatcatttagGAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTTTACCATGGTGTGGATAAAGAGGGAAGGCCTGTCTACATAGAACTAATTG
species | Oryza sativa |
transcript | LOC_Os01g50616.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGTCGGAAATGCTTAGATGGAGGAAGGAGTTCGGGGCTGACAACATAGAG GAATTTGACTATAGCGAATTAGATGATEST: gi|29646803|gb|CB651810.1|CB651810
genomic: GGTCGGAAATGCTTAGATGGAGGAAGGAGTTCGGGGCTGACAACATAGAGgtaaagcaga ... gatcatttagGAATTTGACTATAGCGAATTAGATGAT
EST: GGTCGGAAATGCTTAGATGGAGGAAGGAGTTCGGGGCTGACAACATACAG GAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTTEST: gi|29625600|gb|CB630611.1|CB630611
genomic: GGTCGGAAATGCTTAGATGGAGGAAGGAGTTCGGGGCTGACAACATAGAGgtaaagcaga ... gatcatttagGAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTT
EST: GGTCGGAAATGCTTAGATGGAGGAAGGAGTTCGGGGCTGACAACATAGAG GAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTTEST: gi|33675178|gb|CF303417.1|CF303417
genomic: GGTCGGAAATGCTTAGATGGAGGAAGGAGTTCGGGGCTGACAACATAGAGgtaaagcaga ... gatcatttagGAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTT
EST: GGTCGGAAATGCTTANATGGAGGAAGGAGTTCGGGGCTGACAACATAGAG GAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTTEST: gi|29663641|gb|CB659916.1|CB659916
genomic: GGTCGGAAATGCTTAGATGGAGGAAGGAGTTCGGGGCTGACAACATAGAGgtaaagcaga ... gatcatttagGAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTT
EST: GGTCGGAAATGCTTATATGGAGGAAGGAGTTCGGGGCTGACAACATAGAG GAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTT
genomic: GGTCGGAAATGCTTAGATGGAGGAAGGAGTTCGGGGCTGACAACATAGAGgtaaagcaga ... gatcatttagGAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTT
tagtgatagtctttcttcatgtaacttctggaagtttgacatctggatcatttagGAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTTTACCATGGTGTGGATAAAGAGGGAAGGCCTGTCTACATAGAACTAATTG
atcattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagcagagactggaccatatgctccagtacgtaggtagtgatagtctttcttcatgtaacttctggaagtttgacatctggatcatttagGAATTTGACTATAGCGAATTAGATGATGTTCTGGAGTGCTATCCACAATTTTACCATGGTGTGGATAAAGAGGGAAGGCCTGTCTACATAGAACTAATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG