1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...cttgttaatgtcaaaatgcagtttaattcaaatgaagaatatattgtaacagctttaatcaaatattaaatgatatgattgttatgttttctttttgtagGATTTGCTTCAGCATCAATGCAAAAG
species | Oryza sativa |
transcript | LOC_Os01g49310.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AACTGATACCTTTTACAGTGAAGCTCACCATGCATCAAAATCTACAGCAG GATTTGCTTCAGCATCAATGCAAAAGEST: gi|218487953|gb|FG943628.1|FG943628
genomic: AACTGATACCTTTTACAGTGAAGCTCACCATGCATCAAAATCTACAGCAGgtgagacttg ... ctttttgtagGATTTGCTTCAGCATCAATGCAAAAG
EST: TGAAGCTCACCATGCATCAAAATCTACAGCAG GATTTGCTTCAGGGATCAATGCAAAAGEST: gi|86891181|gb|CI305955.1|CI305955
genomic: TGAAGCTCACCATGCATCAAAATCTACAGCAGgtgagacttg ... ctttttgtagGATTTGCTTCA-GCATCAATGCAAAAG
EST: AACTGATACCTTTTACAGTGAAGCTCACCATGCATCAAAATCTACAGCAG GATTTGCTTCAGCATCAATGCAAAAG
genomic: AACTGATACCTTTTACAGTGAAGCTCACCATGCATCAAAATCTACAGCAGgtgagacttg ... ctttttgtagGATTTGCTTCAGCATCAATGCAAAAG
gtaacagctttaatcaaatattaaatgatatgattgttatgttttctttttgtagGATTTGCTTCAGCATCAATGCAAAAG
ttatgttttcttttt CT-rich tract
tttaatcaaatattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttgttaatgtcaaaatgcagtttaattcaaatgaagaatatattgtaacagctttaatcaaatattaaatgatatgattgttatgttttctttttgtagGATTTGCTTCAGCATCAATGCAAAAG
- - - - - - -aaatgca
- - - - - - - - - - - - - - - - -gaagaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aatcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgattgt