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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtattacactgtgaaacacatttactctaaatgataagaatttgtaggatgatttccaatattattgttttactggacttctgttgatggtatgtactagtaagcaacaatgccaggaaactgattcactcactgacattttctcagGGGTGTCTGGGCTATGATCGCAGTTTTCCTAGCATACTGCACTCTCCAAGCACCTTCAAC

Basic information

species Oryza sativa
transcript LOC_Os01g49024.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163925579|gb|EG715400.1|EG715400
EST:     CTTCATCCAGAGATTACAAGCTCTCATGATAAGGTCATACCTATTAAAAG                         GGGTGTCTGGGCTATGATCGCAGTTTTCCTAGCATACTGCACTCTCCAAGC
genomic: CTTCATCCAGAGATTACAAGCTCTCATGATAAGGTCATACCTATTAAAAGgtattacact ... attttctcagGGGTGTCTGGGCTATGATCGCAGTTTTCCTAGCATACTGCACTCTCCAAGC
EST: gi|88331749|gb|CI640780.1|CI640780
EST:     CTTCATCCAGAGATTACAAGCTCTCATGATAAGGTCATACCTATTAAAAG                         GGGTGTCTGGGCTATGATCGCAGTTTTCCTAGCATACTGCACTCTCCAAGC
genomic: CTTCATCCAGAGATTACAAGCTCTCATGATAAGGTCATACCTATTAAAAGgtattacact ... attttctcagGGGTGTCTGGGCTATGATCGCAGTTTTCCTAGCATACTGCACTCTCCAAGC
EST: gi|88331763|gb|CI640794.1|CI640794
EST:     CTTCATCCAGAGATTACAAGCTCTCATGATAAGGTCATACCTATTAAAAG                         GGGTGTCTGGGCTATGATCGCAGTTTTCCTAGCATACTGCACTCTCCAAGC
genomic: CTTCATCCAGAGATTACAAGCTCTCATGATAAGGTCATACCTATTAAAAGgtattacact ... attttctcagGGGTGTCTGGGCTATGATCGCAGTTTTCCTAGCATACTGCACTCTCCAAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtactagtaagcaacaatgccaggaaactgattcactcactgacattttctcagGGGTGTCTGGGCTATGATCGCAGTTTTCCTAGCATACTGCACTCTCCAAGCACCTTCAAC
                                      cactgac  putative branch site (score: 2)
                                            cattttctc  CT-rich tract
                                           acatttt  TA-rich tract