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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcttcttgtcattctagtcatgttatgtttacccgtatcaatgaaatttaaaagacaagacttttccgtgccttagGAATGCCGCTACATTATCTATCGATGACTTCTACTTGACGGCAGCAGAACAG

Basic information

species Oryza sativa
transcript LOC_Os01g48990.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88336261|gb|CI648848.1|CI648848
EST:     AAGACAACTCTTGTTTTCGCACTTGATTATCTTTTTCGGGTTGCTGGTAG                         GAATGCCGCTACATTATCTATCGATGACTTCTACTTGACGGCAGCAGAACA
genomic: AAGACAACTCTTGTTTTCGCACTTGATTATCTTTTTCGGGTTGCTGGTAGgtgagttctt ... cgtgccttagGAATGCCGCTACATTATCTATCGATGACTTCTACTTGACGGCAGCAGAACA
EST: gi|88330501|gb|CI633714.1|CI633714
EST:     AAGACAACTCTTGTTTTCGCACTTGATTATCTTTTTCGGGTTGCTGGTAG                         GAATGCCGCTACATTATCTATCGATGACTTCTACTTGACGGCAGCAGAACA
genomic: AAGACAACTCTTGTTTTCGCACTTGATTATCTTTTTCGGGTTGCTGGTAGgtgagttctt ... cgtgccttagGAATGCCGCTACATTATCTATCGATGACTTCTACTTGACGGCAGCAGAACA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttatgtttacccgtatcaatgaaatttaaaagacaagacttttccgtgccttagGAATGCCGCTACATTATCTATCGATGACTTCTACTTGACGGCAGCAGAACAG
                                       cttttccgtgcctt  CT-rich tract
              tatcaatgaaatttaa  TA-rich tract