1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgccaatctttgctccgcaaaccggcctgatcttatctgctccgatccattcttgcatctgttctgatcacagagctaacatgtgtctcgtgttgcccccgatgtgatgtgcagTATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAGGTGCGAGAGAAGAAATGTGTGAAGAAGGTATACTCCACTCTGCACCTGG
species | Oryza sativa |
transcript | LOC_Os01g48830.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TGCCTCAGAGGCCCAAGAAGAGGGCCAAGAACGTGGACAAGACCCTCCAA TATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAGEST: gi|88223620|gb|CI223469.1|CI223469
genomic: TGCCTCAGAGGCCCAAGAAGAGGGCCAAGAACGTGGACAAGACCCTCCAAgtatgccaat ... tgatgtgcagTATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAG
EST: TGCCTCAGAGGCCCAAGAAGAGGGCCAAGAACGTGGACAAGACCCTCCAA TATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAG
genomic: TGCCTCAGAGGCCCAAGAAGAGGGCCAAGAACGTGGACAAGACCCTCCAAgtatgccaat ... tgatgtgcagTATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAG
tgttctgatcacagagctaacatgtgtctcgtgttgcccccgatgtgatgtgcagTATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAGGTGCGAGAGAAGAAATGTGTGAAGAAGGTATACTCCACTCTGCACCTGG
agctaac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgccaatctttgctccgcaaaccggcctgatcttatctgctccgatccattcttgcatctgttctgatcacagagctaacatgtgtctcgtgttgcccccgatgtgatgtgcagTATGTATTCCCTGGGATGTGGCTTTCAGACTTGACGAGAGGACGGTATGAGGTGCGAGAGAAGAAATGTGTGAAGAAGGTATACTCCACTCTGCACCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG