1 5' 3' | 2 5' 3' | 3 5' 3' |
...aaccatgaaatagaagctaatatatagtagataggaagtatctcttactagaagcaactcaagaaggtagcaatcatactgaaacatcttggtattacagGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAAC
species | Oryza sativa |
transcript | LOC_Os01g48440.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAG GAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCEST: gi|88271487|gb|CI387540.1|CI387540
genomic: CCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAGgtgagttttt ... ggtattacagGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGC
EST: CACTTTAGAGTCTATTATAGTCCATTCA-GTGGCAGAGGTGGGCTTGCAG GAGTCAAGATTTATCGAGAAGCTTGTTGAGCACGAGAGTCAAATGGAAGGEST: gi|88228916|gb|CI226767.1|CI226767
genomic: CACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGT-GGCTTGCAGgtgagttttt ... ggtattacagGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGG
EST: CCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAG GAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCEST: gi|88978595|gb|CI384937.1|CI384937
genomic: CCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAGgtgagttttt ... ggtattacagGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGC
EST: CCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAG GAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGC
genomic: CCACTTTAGAGTCTATTATAGTCCATTCAGGTGGCAGAGGTGGCTTGCAGgtgagttttt ... ggtattacagGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGC
tactagaagcaactcaagaaggtagcaatcatactgaaacatcttggtattacagGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAAC
ctcttac putative branch site (score: 3)
aatcata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccatgaaatagaagctaatatatagtagataggaagtatctcttactagaagcaactcaagaaggtagcaatcatactgaaacatcttggtattacagGAGTCAAGATTTATCGAGAAGCTTGTTGAGGACGAGAGTCAAATGGAAGGCCTTGGGGATAATTGCACTCGTGTTATGGTCTGGAATTTCGAACTGGAAC
- ccatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - gaagcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaacatc