1 5' 3' | 2 5' 3' | 3 5' 3' |
...tcaggtctatatatgtgctcagttagtatgtttcaaaccagcagcttataaactccttaagagatatgcaaatatgaaatatttattttttccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCCACTGACAGAGCAACCTTTGTGCAAGGCCTGGTGCTCTCCACTTTATTT
species | Oryza sativa |
transcript | LOC_Os01g48190.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGAAAACAATCEST: gi|15852246|gb|BI805042.1|BI805042
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: CCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACACAGEST: gi|33690044|gb|CF318283.1|CF318283
genomic: CCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACA-AG
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|41882403|gb|BX927902.1|BX927902
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|86499111|gb|CI141744.1|CI141744
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|86536326|gb|CI176532.1|CI176532
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGAAAACAAGCEST: gi|89166922|gb|CI104208.1|CI104208
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|16753330|gb|BM037709.1|BM037709
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GTGATACATCAAGTTCATAAGGATACTCCTGCTCACCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|86479261|gb|CI121894.1|CI121894
genomic: -TGATACATCAA-TTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|88834636|gb|CI077919.1|CI077919
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: CATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCGTCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|86887701|gb|CI311908.1|CI311908
genomic: CATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|58596919|gb|CK007447.1|CK007447
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|86429282|gb|CI075963.1|CI075963
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCGTCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|58597316|gb|CK007844.1|CK007844
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|88844223|gb|CI005596.1|CI005596
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|88834654|gb|CI077937.1|CI077937
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|14982059|gb|BI306737.1|BI306737
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|88985157|gb|CI006811.1|CI006811
genomic: GCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|88842011|gb|CI081267.1|CI081267
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|88835384|gb|CI005074.1|CI005074
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|88993775|gb|CI112679.1|CI112679
genomic: GATGATACATCAATTCATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: ATAAGGATACTCCTGCTCAGCCATGGGAATCAAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCEST: gi|22304857|gb|BQ906079.1|BQ906079
genomic: ATAAGGATACTCCTGCTCAGCCATGGGAATCAAGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGC
EST: CCATGGGAATCAGAG GATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAATAGCGGAAACAAG
genomic: CCATGGGAATCA-AGgtatatatat ... tccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAG
ttataaactccttaagagatatgcaaatatgaaatatttattttttccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCCACTGACAGAGCAACCTTTGTGCAAGGCCTGGTGCTCTCCACTTTATTT
tatttattttttcc CT-rich tract
ttaagagatatgcaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaggtctatatatgtgctcagttagtatgtttcaaaccagcagcttataaactccttaagagatatgcaaatatgaaatatttattttttccatggcagGATCGACTCATCGCTCACGAGTGAGGAAAGGGAACAAAAGCGGAAACAAGCCACTGACAGAGCAACCTTTGTGCAAGGCCTGGTGCTCTCCACTTTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA