Sequence
atgc intronic sequence ATGC exonic sequence...tcttctcaaaggtagaatggggatttcacatagttctttactctctttgtccttcagcgcttagcctgttcactggcttttattcttatttcttttgcagTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGAT
Basic information
species | Oryza sativa |
transcript | LOC_Os01g47256.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g47256.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G173989_T02 (Zea mays), 3'ss of exon 4
tcttctcaaaggtagaatggggatttcacatagttctttactctctttgtccttcagcgcttagcctgttcactggcttttat--tcttatttcttttgcagTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGAT-------------------------------------------
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-cgtgggagactgcggatagtgtagtctgttcctccctatttatcgtgattcagcagtgatcagtc-acttattcatgttcatggtcttcttttttttacagTATATACCTTCTGTAGAAGATACCGTTCTTGGTATTGTGGTCGACACCAAACCAGACGTAAGTATACATTTATATTCAGGAGTATGTGAGTTGATACTTG
upper sequence: LOC_Os01g47256.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G540589_T01 (Zea mays), 3'ss of exon 2
tcttctcaaaggtagaatggg-gatttcacatagttctttactctctttgtccttcagcgcttagcctgttcactggcttttattcttatt----tcttttgcagTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGT--TGACACCA-AACCAGAT
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---tcttaactgtaacgtgggagactgtggatagtgct--agtctgttccaccctcttggtcatgtgttttagcagccacttattcttgttcttcttttttgcagTATATACCTTATGTAGAAGATACAGTTCTTGGTACTGTCATACTGTGGTTGGAACCAAAC
upper sequence: LOC_Os01g47256.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G173989_T01 (Zea mays), 3'ss of exon 4
tcttctcaaaggtagaatggggatttcacatagttctttactctctttgtccttcagcgcttagcctgttcactggcttttat--tcttatttcttttgcagTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGAT
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-cgtgggagactgcggatagtgtagtctgttcctccctatttatcgtgattcagcagtgatcagtc-acttattcatgttcatggtcttcttttttttacagTATATACCTTCTGTAGAAGATACCGTTCTTGGTATTGTGGTCGACACCAAACCAGAC
upper sequence: LOC_Os01g47256.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM5G802854_T01 (Zea mays), 3'ss of exon 4
tcttctcaaaggtagaatggggatttcaca--tagttctttactctct-ttgtccttcagcgcttagc--ctgttcactggcttttattcttat-ttcttttgcagTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGAT
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------acgtgggagactccggatagtgtagtctgttcctccctctttattgtgtttcagcagtgatcagtcacttattcatgttcatggtcttctttttttatagTATAAACCTTCTGTAGAAGATACCGTTCTTGGTATTGTGGTCGACACCAAACCAGACMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58653630|gb|CK042310.1|CK042310EST: TACGGCTTTCGAAGCCCAGCAAATACTGGGTCGAGAGCTCGCAGAAGAGG TATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAA
genomic: TACGGCTTTCGAAGCCCAGCAAATACTGGGTCGAGAGCTCGCAGAAGAGGgtgagcgctc ... tcttttgcagTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tttgtccttcagcgcttagcctgttcactggcttttattcttatttcttttgcagTATATACCTTCTGTAGAAGATACAGTTCTTGGTGTTGTGGTTGACACCAAACCAGAT
cttttattcttatttc CT-rich tract
ttttattcttatttct TA-rich tract