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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggtttctggttttcagtctgaatatccattaagttctatagctttacaacagcaccgagactgactgaagaatgtgacgtctatgatatgcaatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTT

Basic information

species Oryza sativa
transcript LOC_Os01g46926.2
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86849404|gb|CI299631.1|CI299631
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88729958|gb|CI753573.1|CI753573
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGGTTTTCCATCCAAACATCAACAGCAACGGGAG
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGG-TTTTCCATCCAAACATCAACAGCAACGGGAG
EST: gi|88294636|gb|CI602356.1|CI602356
EST:     TCCTAGTTACCATCCACTTCCCTCATGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88745084|gb|CI768444.1|CI768444
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|3759930|gb|C97188.1|C97188
EST:     TCCTAGTTACCATCCACTTCCCTNCTGATTATCCCTTCAAACCACCCAAG                         GTGCCGTTTCG-ACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88346503|gb|CI637349.1|CI637349
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88730304|gb|CI753918.1|CI753918
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88762126|gb|CI771682.1|CI771682
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88718883|gb|CI742393.1|CI742393
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAA
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAA
EST: gi|86898783|gb|CI296080.1|CI296080
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88692482|gb|CI736057.1|CI736057
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|88570585|gb|CI661958.1|CI661958
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
EST: gi|87019040|gb|CI297348.1|CI297348
EST:     TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAG                         GTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC
genomic: TCCTAGTTACCATCCACTTCCCTCCTGATTATCCCTTCAAACCACCCAAGgtacttggca ... caatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acaacagcaccgagactgactgaagaatgtgacgtctatgatatgcaatatgcagGTGGCGTTTCGCACCAAGGTTTTCCATCCAAACATCAACAGCAACGGGAGCATTTGCCTTGACATCCTTAAGGACCAATGGAGCCCAGCACTAACCATTT
             gactgac  putative branch site (score: 2)
                                    tatgatat  TA-rich tract