1 5' 3' | 2 5' 3' | 3 5' 3' |
...accatagccatcctttgaaatcctctgtcatgtgcatcattgctgtggtggcttgctgagtacggttggtactcacccttgcaaatataaaatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGATGAAGACGAAGGCGCCCAGTAGGTCTTAGTACGGTCGTTGCCTGTGGC
species | Oryza sativa |
transcript | LOC_Os01g46169.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG AAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGEST: gi|88519058|gb|CI446712.1|CI446712
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... aatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAG
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG AAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGEST: gi|88214455|gb|CI214304.1|CI214304
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... aatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAG
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG AAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGEST: gi|88998009|gb|CI037894.1|CI037894
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... aatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAG
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG AAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGEST: gi|88980104|gb|CI026394.1|CI026394
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... aatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAG
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG AAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGEST: gi|88434939|gb|CI549136.1|CI549136
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... aatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAG
EST: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAG AAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAG
genomic: GGGAGCCACGGATCCGGGTGAAGGCCAAGACCCGCAAGACCTTGAGCAAGgcaagtcatc ... aatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAG
tggtggcttgctgagtacggttggtactcacccttgcaaatataaaatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGATGAAGACGAAGGCGCCCAGTAGGTCTTAGTACGGTCGTTGCCTGTGGC
tactcac putative branch site (score: 12)
ttgcaaatataaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| accatagccatcctttgaaatcctctgtcatgtgcatcattgctgtggtggcttgctgagtacggttggtactcacccttgcaaatataaaatttatcagAAGCGGGAGATGAAGCTTCGGAGGATCCCTATGCCTACTACCAGGAGGGAGATGAAGACGAAGGCGCCCAGTAGGTCTTAGTACGGTCGTTGCCTGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - gccatcc
- - - - - - - - - - - - - - - -gtgcatc
- - - - - - - - - - - - - - - - - - - -ttgctgt
- - - - - - - - - - - - - - - - - - - - - - - - - - ttgctga