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gtatgctcatggaaatatctatctttaacttagttttgtctaaacctttggcttctggcttatttgtgtacgcggatcacctctgatgtctcttcatttgcctgcagGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAG
species | Oryza sativa |
transcript | LOC_Os01g43910.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACG GATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCEST: gi|58673221|gb|CK061907.1|CK061907
genomic: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACGgtatgctcat ... ttgcctgcagGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTC
EST: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACG GATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCEST: gi|33678274|gb|CF306513.1|CF306513
genomic: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACGgtatgctcat ... ttgcctgcagGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTC
EST: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACG GATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCEST: gi|58604024|gb|CK014552.1|CK014552
genomic: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACGgtatgctcat ... ttgcctgcagGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTC
EST: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACG GATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCEST: gi|29627445|gb|CB632456.1|CB632456
genomic: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACGgtatgctcat ... ttgcctgcagGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTC
EST: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACG GATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTC
genomic: GACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACGgtatgctcat ... ttgcctgcagGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTC
ttctggcttatttgtgtacgcggatcacctctgatgtctcttcatttgcctgcagGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAG
ctctgat putative branch site (score: 37)
tctcttcatttgcct CT-rich tract
ttatttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctcatggaaatatctatctttaacttagttttgtctaaacctttggcttctggcttatttgtgtacgcggatcacctctgatgtctcttcatttgcctgcagGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT