1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagtatattgtagaattcgacaataccacttcgttctcatgagatgacttaaacaatttgcagctagaagtagtactaaaactcacttatatgtgcattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACCTTCACTCGAAAGACATACAAGCAAATGGAGATCGGAGGTGTCACTTACC
species | Oryza sativa |
transcript | LOC_Os01g43750.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCCTGAGCCGCCTGAAAATC GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACCEST: gi|86497365|gb|CI139998.1|CI139998
genomic: GGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATC GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACCEST: gi|14982074|gb|BI306752.1|BI306752
genomic: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: AAACAAATCTGAATACGAAGGCCTGAGCCGCCTGAAAATC GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACCEST: gi|86499571|gb|CI142204.1|CI142204
genomic: AAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATC GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACCEST: gi|88228751|gb|CI228231.1|CI228231
genomic: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATC GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACCEST: gi|29614912|gb|CB619925.1|CB619925
genomic: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
EST: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATC GTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
genomic: TATTCGGGAAAAACAAACCTGAATACGAAGGCCTGAGCCGCCTGAAAATCgtgagtatat ... cattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACC
aaacaatttgcagctagaagtagtactaaaactcacttatatgtgcattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACCTTCACTCGAAAGACATACAAGCAAATGGAGATCGGAGGTGTCACTTACC
tactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtatattgtagaattcgacaataccacttcgttctcatgagatgacttaaacaatttgcagctagaagtagtactaaaactcacttatatgtgcattgtgtagGTGACAATGATCCTCTATGAGGTTCTTCGGTTGTACCCACCAGCCGTAACCTTCACTCGAAAGACATACAAGCAAATGGAGATCGGAGGTGTCACTTACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC