1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...gtctgtgtatcgaaacttttgtattggtgtccacatatgatatgttgtgtgtgtacctcattcgttggtagtaagtagtaacttctgttggtctccacagGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAG
species | Oryza sativa |
transcript | LOC_Os01g43250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATG GTTACTGCATACTCAEST: gi|29658631|gb|CB654906.1|CB654906
genomic: CTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGgtaagctcta ... gtctccacagGTTACTGCATACTCA
EST: CTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATG GTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGEST: gi|29658632|gb|CB654907.1|CB654907
genomic: CTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGgtaagctcta ... gtctccacagGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCG
EST: CTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATG GTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGEST: gi|86908206|gb|CI300676.1|CI300676
genomic: CTCACATACTACACGTACAGTTTGGATTACAACTGTCTAGTCTAAAAATGgtaagctcta ... gtctccacagGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCG
EST: TACAACTGTCTAGTCTAAAAATG GTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCG
genomic: TACAACTGTCTAGTCTAAAAATGgtaagctcta ... gtctccacagGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCG
tgtgtgtgtacctcattcgttggtagtaagtagtaacttctgttggtctccacagGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAG
tagtaac putative branch site (score: 35)
tctccac putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtgtatcgaaacttttgtattggtgtccacatatgatatgttgtgtgtgtacctcattcgttggtagtaagtagtaacttctgttggtctccacagGTTACTGCATACTCAGATGGCCAAGTGAAGGTTTATGAGCTCTTGGACTCGTTGGAATTAGACAAGTGGCAGCTTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - gtgtatc
- - - - - - - - - -tgtattg
- - - - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acttctg