1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...aggttagccatagcaattttttaaaaagatttttagcaatagcattgttcatgctagttctaagtttattaactctcaagcttataccatccttatgcagATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGTGGATTCCCTTGCACAGCAT
species | Oryza sativa |
transcript | LOC_Os01g42690.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAAT ATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGTEST: gi|88399892|gb|CI585811.1|CI585811
genomic: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAATgtaagatacc ... ccttatgcagATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGT
EST: CTGGTCC-AGCTACTGGATTCTCTTCCTCTGCCTAAT ATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGTEST: gi|88345562|gb|CI629823.1|CI629823
genomic: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAATgtaagatacc ... ccttatgcagATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGT
EST: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAAT ATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGTEST: gi|88346887|gb|CI628557.1|CI628557
genomic: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAATgtaagatacc ... ccttatgcagATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGT
EST: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAAT ATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTNGGTEST: gi|66924023|gb|CX110871.1|CX110871
genomic: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAATgtaagatacc ... ccttatgcagATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGT
EST: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAAT ATCAAATGGATTTGCCCTACTGCACCAACACGCGCTGTTGCTGCTTTCGGT
genomic: CTGGTCCCAGCTACTGGATTCTCTTCCTCTGCCTAATgtaagatacc ... ccttatgcagATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGT
tgttcatgctagttctaagtttattaactctcaagcttataccatccttatgcagATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGTGGATTCCCTTGCACAGCAT
tattaac putative branch site (score: 1)
ccatcctt putative PPT
ttctaagtttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggttagccatagcaattttttaaaaagatttttagcaatagcattgttcatgctagttctaagtttattaactctcaagcttataccatccttatgcagATCAAATGGATTTGCCCTACTGCACCAACACGCCCTGTTGCTGCTTTCGGTGGATTCCCTTGCACAGCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA