1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...atttttctactaggatgatgagcttattaacatgattctgaaagagaaacaagtgtgatgtgtgccggatcctcaatatatactggtttttcgtttgcagGTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAGAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG
species | Oryza sativa |
transcript | LOC_Os01g40630.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GATGCCCAGAGAG GTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAGEST: gi|38470631|gb|CF954762.1|CF954762
genomic: GATGCCCAGAGAGgtgagctgtc ... tcgtttgcagGTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAG
EST: GGTCATCCCGAAATCCTTGATGCCCAGAGAG GTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAGEST: gi|25798342|gb|CA754303.1|CA754303
genomic: GGTCATCCCGAAATCCTTGATGCCCAGAGAGgtgagctgtc ... tcgtttgcagGTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAG
EST: GGTCATCCCGAAATCCTTGATGCCCAGAGAG GTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAGEST: gi|29675215|gb|CB671490.1|CB671490
genomic: GGTCATCCCGAAATCCTTGATGCCCAGAGAGgtgagctgtc ... tcgtttgcagGTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAG
EST: GGTCATCCCGAAATCCTTGATGCCCAGAGAG GTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAG
genomic: GGTCATCCCGAAATCCTTGATGCCCAGAGAGgtgagctgtc ... tcgtttgcagGTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAG
gaaacaagtgtgatgtgtgccggatcctcaatatatactggtttttcgtttgcagGTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAGAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG
tttttcgttt CT-rich tract
tcaatatata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atttttctactaggatgatgagcttattaacatgattctgaaagagaaacaagtgtgatgtgtgccggatcctcaatatatactggtttttcgtttgcagGTCACTGGTGAGCCTGTTGGTGAAGTTAGAGCGGTCTCTGGCATGCACGAGAGGAAGGCTGAAATGGCCCGGTTTGCTGATGCGTTCATTGCACTGCCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - atgatga
- - - - - - - - - - - - - - -acatgat
- - - - - - - - - - - - - - - - - - - - - - agaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - -tgtgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgccgg