1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ccttagtacctgatgaagaaatgcctacatattaccacattttactaaccaaaactcaaaaagtctatatgttgttgattattatcatcctatgttgcagGATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAAAGACTAGAATCAGGTGACCATGATAAATTGCATGCAGAGAAAGTGCGAG
species | Oryza sativa |
transcript | LOC_Os01g40330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CACTAGAGAAACTTTATGAAGAGGAGCAAAAACTCTACAAGTTAGTCAAG GATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAAEST: gi|66923673|gb|CX110521.1|CX110521
genomic: CACTAGAGAAACTTTATGAAGAGGAGCAAAAACTCTACAAGTTAGTCAAGgtgaattaca ... tatgttgcagGATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAA
EST: CACTAGAGAAACTTTATGAAGAGGAGCAAAAACTCTACAAGTTAGTCAAG GATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAAEST: gi|58671997|gb|CK060683.1|CK060683
genomic: CACTAGAGAAACTTTATGAAGAGGAGCAAAAACTCTACAAGTTAGTCAAGgtgaattaca ... tatgttgcagGATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAA
EST: GACTAGAGAAACTTTATGAAGAGGAGCAAAAACTCTACAAGTTAGTCAAG GATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAAEST: gi|33675729|gb|CF303968.1|CF303968
genomic: CACTAGAGAAACTTTATGAAGAGGAGCAAAAACTCTACAAGTTAGTCAAGgtgaattaca ... tatgttgcagGATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAA
EST: CACTAGAGAAACTTTATGAAGAGGAGCAAAAACTCTACAAGTTAGTCAAG GATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAA
genomic: CACTAGAGAAACTTTATGAAGAGGAGCAAAAACTCTACAAGTTAGTCAAGgtgaattaca ... tatgttgcagGATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAA
taaccaaaactcaaaaagtctatatgttgttgattattatcatcctatgttgcagGATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAAAGACTAGAATCAGGTGACCATGATAAATTGCATGCAGAGAAAGTGCGAG
tcatcct CT-rich tract
ttgttgattattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccttagtacctgatgaagaaatgcctacatattaccacattttactaaccaaaactcaaaaagtctatatgttgttgattattatcatcctatgttgcagGATGAAGAATTTGCAAGGCTCCAGTACAGAAAGAACACCTCGTTGCTACAAAGACTAGAATCAGGTGACCATGATAAATTGCATGCAGAGAAAGTGCGAG
- - - - cctgatg
- - - - - - - - - - -tgcctac
- - - - - - - - - - - - - - - - - - - - - - -taaccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - ctcaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgttgt