1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...taaactacaactttgaagccttcttacagttccttcaattaataatggtgattctttgattaacttggtctaaaattacatccttgcttcatccttacagGAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAAATCTTGGTAGTGTTTCAGCATTTAGAAGTGCTGGTCAAGTGACAAAAGA
species | Oryza sativa |
transcript | LOC_Os01g39260.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGGGTTGATAGGTTGGAGGATAGCACCTTGCTGAAAACATTGCAGAGAG GAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAAEST: gi|29626716|gb|CB631727.1|CB631727
genomic: CAGGGTTGATAGGTTGGAGGATAGCACCTTGCTGAAAACATTGCAGAGAGgtactaatac ... atccttacagGAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAA
EST: CAGGGTTGATAGGTTGGAGGATAGCACCTTGCTGAAAACATTGCAGAGAG GAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAAEST: gi|86909184|gb|CI302776.1|CI302776
genomic: CAGGGTTGATAGGTTGGAGGATAGCACCTTGCTGAAAACATTGCAGAGAGgtactaatac ... atccttacagGAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAA
EST: CAGGCTTGATAGGTTGGAGGATAGCACCTTGCTGAAAACATTGCAGAGAG GAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAA
genomic: CAGGGTTGATAGGTTGGAGGATAGCACCTTGCTGAAAACATTGCAGAGAGgtactaatac ... atccttacagGAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAA
tggtgattctttgattaacttggtctaaaattacatccttgcttcatccttacagGAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAAATCTTGGTAGTGTTTCAGCATTTAGAAGTGCTGGTCAAGTGACAAAAGA
tccttgcttcatcctt CT-rich tract
taaaattacat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaactacaactttgaagccttcttacagttccttcaattaataatggtgattctttgattaacttggtctaaaattacatccttgcttcatccttacagGAATTGCTGCTTCAGCAAGGGAGGAAGAAAACCTTGGTAGTGTTTCAGAAAATCTTGGTAGTGTTTCAGCATTTAGAAGTGCTGGTCAAGTGACAAAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- aactaca
- - - - - - - - -gccttct
- - - - - - - - - - - - - - - tccttca
- - - - - - - - - - - - - - - - - - - - - - -tggtgat