1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...actacttttactttgaagcctgtgtatgtttccttcagttattaatggtgactatttgattaaactggcataaagcttcattgatgtgttatccgtacagGTATGGCTGTTTCAGGAGGAGAGGGAGAAAGAGTTGGTAGCTCTTCTGCATTAAAGAGTGCTGGACAAGCGACAAAAGATGGAATTCTTGGCACTGCAAA
species | Oryza sativa |
transcript | LOC_Os01g39250.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGGTTGATAGGCTGGATGATAGCACCTTGCTTAAAACACTACGGAGAG GTATGGCTGTTTCAGGAGGAGAGGGAGAAAGAGTTGGTAGCTCTTCTGCATEST: gi|88363611|gb|CI608968.1|CI608968
genomic: CAAGGTTGATAGGCTGGATGATAGCACCTTGCTTAAAACACTACGGAGAGgtaccgatat ... atccgtacagGTATGGCTGTTTCAGGAGGAGAGGGAGAAAGAGTTGGTAGCTCTTCTGCAT
EST: CAAGGTTGATAGGCTGGATGATAGCACCTTGCTTAAAACACTACGGAGAG GTATGGCTGTTTCAGGAGGAGAGGGAGGAAGACTTGGTAGCTCTTCTGCATEST: gi|88360423|gb|CI612142.1|CI612142
genomic: CAAGGTTGATAGGCTGGATGATAGCACCTTGCTTAAAACACTACGGAGAGgtaccgatat ... atccgtacagGTATGGCTGTTTCAGGAGGAGAGGGAGAAAGAGTTGGTAGCTCTTCTGCAT
EST: CAAGGTTGATAGGCTGGATGATAGCACCTTGCTTAAAACACTACGGAGAG GTATGGCTGTTTCAGGAGGAGAG
genomic: CAAGGTTGATAGGCTGGATGATAGCACCTTGCTTAAAACACTACGGAGAGgtaccgatat ... atccgtacagGTATGGCTGTTTCAGGAGGAGAG
tggtgactatttgattaaactggcataaagcttcattgatgtgttatccgtacagGTATGGCTGTTTCAGGAGGAGAGGGAGAAAGAGTTGGTAGCTCTTCTGCATTAAAGAGTGCTGGACAAGCGACAAAAGATGGAATTCTTGGCACTGCAAA
cattgat putative branch site (score: 9)
actatttgattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actacttttactttgaagcctgtgtatgtttccttcagttattaatggtgactatttgattaaactggcataaagcttcattgatgtgttatccgtacagGTATGGCTGTTTCAGGAGGAGAGGGAGAAAGAGTTGGTAGCTCTTCTGCATTAAAGAGTGCTGGACAAGCGACAAAAGATGGAATTCTTGGCACTGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - -gtgtatg
- - - - - - - - - - - - - - - -ccttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcata