Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aacctacctatctgaagctggttaccaacctcataaacttgatttggatggatgaccctatgtccttaatctgtttccttttcttgtttgatgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGCTCA

Basic information

species Oryza sativa
transcript LOC_Os01g36950.2
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g36950.2 (Oryza sativa), 3'ss of exon 3
lower sequence: GRMZM2G071154_T01 (Zea mays), 3'ss of exon 3
aacctacctatctgaagctggttaccaacctcataaacttgatttggatgg-atgaccctatgtccttaatctgtttccttttcttgtttgatgccat-cagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGCTCA
     | ||    | ||      |       |||  |  || | | | ||        |   ||  || |    |     || |   | |||||   | ||||||  ||| || ||| |||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| ||||||||| |||| |||||| 
-gaggatctggtcgcaggctccaagtgcgaccatctagatgctgtagctgctgcatttcctcgttattgacgcatggtgcttgcg-atgtgatgtgctgcagGTGCGGGTGGCAACGCGGAAGATCTACGACCCGCTGGAGGAGGACGCCTTCCGCCCCATCCTGCACCACTACGACGGGCCCAAGTTCCGGCTCGAGCTCT

upper sequence: LOC_Os01g36950.2 (Oryza sativa), 3'ss of exon 3
lower sequence: AC207342.3_FGT008 (Zea mays), 3'ss of exon 3
------aacctacctatctgaagctggttaccaacctcataaacttgatttggatggatgaccctatgtccttaatctgtttccttttcttgtttgatgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGCTCA
      |   |   |    | | || |    | |     ||      | | | |    | |||| | ||  | |    |  | | |    | | |||||    ||||||   || || ||| |||||||||| || || |||||||||||||||||||| || ||||| |||||||||||||| ||||||||  |||| |||||| 
tgtagcatgttgtttcatcgcatctaggcctctagggagtatctagtactcgtagttgttaccc-aagtggtga---cgcatgcatgatgtttgtgatgt--gcagGTGCGAGTGGCAACGCGGAAGATCTACGATCCACTGGAGGAGGACGCCTTCCGCCCCATCCTTCACCACTACGACGGGCCCAAGTTTCGGCTCGAGCTCT

upper sequence: LOC_Os01g36950.2 (Oryza sativa), 3'ss of exon 3
lower sequence: Vv02s0025g01720.t01 (Vitis vinifera), 3'ss of exon 3
----aacctacctatctgaagctggttaccaacctcataaacttgatttggatggatgaccctatgtccttaatctgtttccttttcttgtttgatgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGCTCA
    ||  | || ||    | ||| |||  | |   || |   |   ||  ||  | |  | ||     ||    | |  | || | | ||||  ||  |  |||||  ||| |  || ||||| |||| ||| ||  |||| |||||  | ||| ||||| ||||||| ||||| ||||||||||||||| | |||||||| |
gaagaaattccccatacccatctgctta--atctagatgatggtccatttaataaaaggtcatactgaattggggtttaccattctgtggttttgtg--aatagGTGCGGGTGGTCACCAGGAAAATCTGTGAGCCAATGGAAGAGGATTCATTCAGGCCGGTCCTCCATCACTATGACGGCCCCAAGTTCCGCCTGGAGCTGA

upper sequence: LOC_Os01g36950.2 (Oryza sativa), 3'ss of exon 3
lower sequence: EFJ24245 (Selaginella moellendorffii), 3'ss of exon 3
aacctacctatctgaagctggttaccaacctcataaacttgatttggatggatgaccctatgtccttaatctgtttccttttcttgtttgatgccat-cagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGCTCA
        | |||   | |   ||  |   |   || |||  | | | |      |   | |  ||  |   |    |   ||     |||| |||| ||||| |          | | |||  || | |  | ||||||||||| || || ||||| || ||||| |||||||||||||| |||||  |  || ||||| 
-----gtttgtctctcgttttctaggagaatagaaagctttttcttgttcttgagctgcaagagctacaaaggaaaacccatc----gtgatcccatacagGTAAGAACGAGAGTGCGAAAGGCCTGTAAAGCTCTGGAGGAGGATGCGTTTCGGCCCATACTCCATCACTACGACGGCCCAAAGTTTCGCTTGCAGCTCT

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|33684836|gb|CF313075.1|CF313075
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCCTT
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACG-CCTT
EST: gi|87033588|gb|CI188212.1|CI188212
EST:     CGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGCTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|38472869|gb|CF957001.1|CF957001
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29675526|gb|CB671801.1|CB671801
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86413023|gb|CI067428.1|CI067428
EST:     CCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|313080398|gb|HO213406.1|HO213406
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86599861|gb|CI256023.1|CI256023
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|89197282|gb|CI052012.1|CI052012
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88847460|gb|CI015953.1|CI015953
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88829644|gb|CI074514.1|CI074514
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|313080399|gb|HO213407.1|HO213407
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86422222|gb|CI059795.1|CI059795
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|87029407|gb|CI250340.1|CI250340
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86498989|gb|CI141622.1|CI141622
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86413914|gb|CI068121.1|CI068121
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29680788|gb|CB677063.1|CB677063
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29681137|gb|CB677412.1|CB677412
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29658386|gb|CB654661.1|CB654661
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86509209|gb|CI151842.1|CI151842
EST:     TGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: TGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88257745|gb|CI360331.1|CI360331
EST:     ACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: ACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86488809|gb|CI131442.1|CI131442
EST:     GTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: GTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|87028934|gb|CI351237.1|CI351237
EST:     TGCCCCGGCGAGTCGCGCTTCCCTGCACA-                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: TGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|89199001|gb|CI253075.1|CI253075
EST:     GCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: GCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29657456|gb|CB653731.1|CB653731
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88832126|gb|CI014685.1|CI014685
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88206247|gb|CI206096.1|CI206096
EST:     CCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29658418|gb|CB654693.1|CB654693
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86511691|gb|CI154324.1|CI154324
EST:     TCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: TCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88967589|gb|CI016104.1|CI016104
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|87026813|gb|CI259466.1|CI259466
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|9884513|gb|BE607346.1|BE607346
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88245255|gb|CI245104.1|CI245104
EST:     GTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: GTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|89169490|gb|CI109849.1|CI109849
EST:     GCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: GCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86487628|gb|CI130261.1|CI130261
EST:     GGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: GGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|89195184|gb|CI051297.1|CI051297
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86823360|gb|CI256347.1|CI256347
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29657554|gb|CB653829.1|CB653829
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|87031207|gb|CI259787.1|CI259787
EST:     GGCGTGGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: GGCGT-GGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86488982|gb|CI131615.1|CI131615
EST:     GTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: GTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86547116|gb|CI187322.1|CI187322
EST:     AGAAGTGCCCCGGCGAGTC-CGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: AGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29682521|gb|CB678796.1|CB678796
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|86538667|gb|CI178873.1|CI178873
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88836485|gb|CI078382.1|CI078382
EST:     GCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: GCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29671749|gb|CB668024.1|CB668024
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29682522|gb|CB678797.1|CB678797
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|29668873|gb|CB665148.1|CB665148
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|88970926|gb|CI387055.1|CI387055
EST:     CGGCGT-GGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGGCGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
EST: gi|87030339|gb|CI252616.1|CI252616
EST:     CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAG                         GTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC
genomic: CGGCGTGGGAGGACAAGAAGTGCCCCGGCGAGTCGCGCTTCCCTGCACAGgtaccattga ... atgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatggatgaccctatgtccttaatctgtttccttttcttgtttgatgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGCTCA
                    ttaatct  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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aacctacctatctgaagctggttaccaacctcataaacttgatttggatggatgaccctatgtccttaatctgtttccttttcttgtttgatgccatcagGTGAAGGTTGCGACGAGGAAGATCTATGACCCGCTGGAGGAGGACGCCTTCCGGCCGATCCTCCACCACTACGACGGCCCCAAGTTCAGGCTGGAGCTCA

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA