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...tggaagctgaattggattagtctgtcttctactggtctttagctgctataaatcagtaaaattaaataataaattagtctgttttctacttgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCGGGGAGGTCAACGGTGCCCTGCAAGAGATGGGTATCAATACGATTGATC
species | Oryza sativa |
transcript | LOC_Os01g35580.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAG GATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCEST: gi|58681060|gb|CK069747.1|CK069747
genomic: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattc ... tgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
EST: AGGGTGGAAAATATAA-TGCATCCACACATTGAAAGATCATACTG-TGAG GATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCEST: gi|33797156|gb|CF324443.1|CF324443
genomic: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattc ... tgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
EST: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAG GATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCEST: gi|58675222|gb|CK063909.1|CK063909
genomic: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattc ... tgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
EST: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAG GATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
genomic: AGGGTGGAAAATATAATTGCATCCACACATTGAAAGATCATACTGCTGAGgttagtattc ... tgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTC
ctataaatcagtaaaattaaataataaattagtctgttttctacttgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCGGGGAGGTCAACGGTGCCCTGCAAGAGATGGGTATCAATACGATTGATC
ttttctacttgtctt CT-rich tract
aatcagtaaaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggaagctgaattggattagtctgtcttctactggtctttagctgctataaatcagtaaaattaaataataaattagtctgttttctacttgtcttacagGATATTCCGCCATTCGCCACCATGGCTAACATCAGAACCGTCTCCAGCCTCGGGGAGGTCAACGGTGCCCTGCAAGAGATGGGTATCAATACGATTGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG