1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgctaactctggtgatctccttttccccaataaatattcacagactttcttcaagcaatgcctaatatgcttgtagaagcaaaatttgttgtattggagGAATATTCATTACACTGGACGTAGATTTTTTGTTACTACTGTCATTGCACTGCTTTTTGGCACAGTATTTTGGAACCTTGGCATGAAAAG
species | Oryza sativa |
transcript | LOC_Os01g33240.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
ctttcttcaagcaatgcctaatatgcttgtagaagcaaaatttgttgtattggagGAATATTCATTACACTGGACGTAGATTTTTTGTTACTACTGTCATTGCACTGCTTTTTGGCACAGTATTTTGGAACCTTGGCATGAAAAG
gcctaat putative branch site (score: 3)
aaaatttgttgtatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgctaactctggtgatctccttttccccaataaatattcacagactttcttcaagcaatgcctaatatgcttgtagaagcaaaatttgttgtattggagGAATATTCATTACACTGGACGTAGATTTTTTGTTACTACTGTCATTGCACTGCTTTTTGGCACAGTATTTTGGAACCTTGGCATGAAAAG
ctgctaa
- - - - -ctggtga
- - - - - - - - - - - - - - caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcaaaa