1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gcaggtgaaacccttttcgtctcaacattaaatttcagtgtcatatagcaatccaaaaataatatggttcttacactatagattttagaatatattaatctgttttctacagcaacatcatttgcgaaaactccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTCCCTCACCTTCTCAGATATTTGATTG
species | Oryza sativa |
transcript | LOC_Os01g25990.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAG GCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTCEST: gi|29675941|gb|CB672216.1|CB672216
genomic: GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAGgcaggtgaaa ... tccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
EST: GGGATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAG GCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTCEST: gi|29669452|gb|CB665727.1|CB665727
genomic: GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAGgcaggtgaaa ... tccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
EST: GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAG GCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
genomic: GGCATCACGAAATCCAGAAATTGATTTGGTTCTTATACTAGTAAATCCAGgcaggtgaaa ... tccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTC
agaatatattaatctgttttctacagcaacatcatttgcgaaaactccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTCCCTCACCTTCTCAGATATTTGATTG
tattaat putative branch site (score: 2)
ctccgtt putative PPT
atattaatctgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcaggtgaaacccttttcgtctcaacattaaatttcagtgtcatatagcaatccaaaaataatatggttcttacactatagattttagaatatattaatctgttttctacagcaacatcatttgcgaaaactccgttgcagGCAATATTGCCTCTTTTGGAAATGGTGCCAAGCAACCTTCCTGTCACTCTCCCTCACCTTCTCAGATATTTGATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA