1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaagtacatagtccgatttgatctgatggtgatgtttattttgcaacatgaactgcaaacctgagtgtgattaatttagATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCTCTTGGTTACAGTGGCGAACAACTTGGGAGTGGATCCAGAGGTGATTGCG
species | Oryza sativa |
transcript | LOC_Os01g24980.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTGCAGAACAGGAATTTCAGATTCTGGCCTAACCAACTTGCTAAATTCAG ATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCTEST: gi|29641826|gb|CB646833.1|CB646833
genomic: GTGCAGAACAGGAATTTCAGATTCTGGCCTAACCAACTTGCTAAATTCAGgtaagtacat ... attaatttagATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCT
EST: GTGCAGAACAGGAATTTCAGATTCTGGCCTAACCAACTTGCTAAATTCAG ATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCTEST: gi|29663537|gb|CB659812.1|CB659812
genomic: GTGCAGAACAGGAATTTCAGATTCTGGCCTAACCAACTTGCTAAATTCAGgtaagtacat ... attaatttagATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCT
EST: GTGCAGAACAGGAATTTCAGATTCTGGCCTAACCAACTTGCTATATTCAT ATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCT
genomic: GTGCAGAACAGGAATTTCAGATTCTGGCCTAACCAACTTGCTAAATTCAGgtaagtacat ... attaatttagATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCT
gatggtgatgtttattttgcaacatgaactgcaaacctgagtgtgattaatttagATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCTCTTGGTTACAGTGGCGAACAACTTGGGAGTGGATCCAGAGGTGATTGCG
gattaat putative branch site (score: 6)
atgtttatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtacatagtccgatttgatctgatggtgatgtttattttgcaacatgaactgcaaacctgagtgtgattaatttagATCGGCACTGGACAAATACTCTGCTGCTGTGAAGAGCATAGTGGATTTCCTCTTGGTTACAGTGGCGAACAACTTGGGAGTGGATCCAGAGGTGATTGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA