1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtttttatttttttcccccttctgtgaaccaagattatgtaccacatactatgccagattaacagaactttctaccttctgtcaaaatgcagACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGGGCTCTTGGCTGCCTTCCTCAGAAGCTCTCCATTCCTCGGAAGAATGACAGCG
species | Oryza sativa |
transcript | LOC_Os01g22660.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAGTTGCAAGGTTCCCTCCAATACTTGATGAGATCAAGGATGCTATCCAG ACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGGGCTEST: gi|218502135|gb|FG944929.1|FG944929
genomic: TAGTTGCAAGGTTCCCTCCAATACTTGATGAGATCAAGGATGCTATCCAGgtttttattt ... caaaatgcagACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGGGCT
EST: TAGTTGCAAGGTTCCCTCCAATACTTGATGAGATCAAGGATGCTATCCAG ACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGAGCTEST: gi|218493738|gb|FG944163.1|FG944163
genomic: TAGTTGCAAGGTTCCCTCCAATACTTGATGAGATCAAGGATGCTATCCAGgtttttattt ... caaaatgcagACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGGGCT
EST: TAGTTGCAAGGTTCCCTCCAATACTTGATGAGATCAAGGATGCTATCCAG ACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGGGCTEST: gi|58685309|gb|CK073996.1|CK073996
genomic: TAGTTGCAAGGTTCCCTCCAATACTTGATGAGATCAAGGATGCTATCCAGgtttttattt ... caaaatgcagACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGGGCT
EST: TAGTTGCAAGGTTCCCTCCAATACTTGATGAGATCAAGGATGCTATCCAG ACTTTGTATGACAATGGGAGCCGGAAC
genomic: TAGTTGCAAGGTTCCCTCCAATACTTGATGAGATCAAGGATGCTATCCAGgtttttattt ... caaaatgcagACTTTGTATGACAATGGGAGCCGGAAC
tgtaccacatactatgccagattaacagaactttctaccttctgtcaaaatgcagACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGGGCTCTTGGCTGCCTTCCTCAGAAGCTCTCCATTCCTCGGAAGAATGACAGCG
gattaac putative branch site (score: 2)
ctttctaccttctgtc putative PPT
atactat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttttatttttttcccccttctgtgaaccaagattatgtaccacatactatgccagattaacagaactttctaccttctgtcaaaatgcagACTTTGTATGACAATGGGAGCCGGAACTTCTGGGTTCATGGAACAGGGGCTCTTGGCTGCCTTCCTCAGAAGCTCTCCATTCCTCGGAAGAATGACAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA