1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattgatatttctcttgtatctattgcaatgttcatatttccaagctacatgtactaccaagcaagaatattcttctagacattccatgctctctgagacctctaggttcatttgactgcaatacttgtatggaattctaagacatatttgttaactttgtgtgcttttttcagAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAG
species | Oryza sativa |
transcript | LOC_Os01g21960.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTTACTGTGTGGAGGGTACTCAAAG AATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCAEST: gi|66932289|gb|CX119137.1|CX119137
genomic: GTTACTGTGTGGAGGGTACTCAAAGgtattgatat ... cttttttcagAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCA
EST: CACAAGAACTTGGTCCGGCTTCTGGGTTACTGTGTGGAGGGTACTCAAAG AATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCA
genomic: CACAAGAACTTGGTCCGGCTTCTGGGTTACTGTGTGGAGGGTACTCAAAGgtattgatat ... cttttttcagAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCA
caatacttgtatggaattctaagacatatttgttaactttgtgtgcttttttcagAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAG
tgttaac putative branch site (score: 17)
tgcttttttc putative PPT
atatttgttaacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgatatttctcttgtatctattgcaatgttcatatttccaagctacatgtactaccaagcaagaatattcttctagacattccatgctctctgagacctctaggttcatttgactgcaatacttgtatggaattctaagacatatttgttaactttgtgtgcttttttcagAATGCTTGTCTATGAGTATGTAAACAATGGAAACCTAGAGCAATGGCTTCATGGAGCTATGAGTCACCGTGGTTCCCTTACATGGGAGGCCCGTGTAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT