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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccgtgctcttctcgaccactcaatgctgctctcttgctgtgtcaccaatactctgttctccttctcccctgcttctttggttgctctgtttttgacatcctctgtttcgggattgtgtagGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCGCCATACGTCTGCCCATACTACTGCTCCTACTCCGGGTACCAG

Basic information

species Oryza sativa
transcript LOC_Os01g21070.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58654811|gb|CK043491.1|CK043491
EST:     GCAAGTCCGACCCGGCCTACGCCAGCCGCCTCGTCGCCAGGGCCAAGAGG                         GTGTGGGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCG
genomic: GCAAGTCCGACCCGGCCTACGCCAGCCGCCTCGTCGCCAGGGCCAAGAGGgtccgtgctc ... gattgtgtagGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccctgcttctttggttgctctgtttttgacatcctctgtttcgggattgtgtagGTGTTTGAGTTCGCGGACAAGCACAGGGGCACGTACAGCACCCGTCTCTCGCCATACGTCTGCCCATACTACTGCTCCTACTCCGGGTACCAG
                        ttttgac  putative branch site (score: 3)
                     tgttttt  TA-rich tract