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gtactgacatagcattggtctatggtgatcactactatgtttgtactgtagtacttcatgttgcaatagatagaatttatgtggcaaacactaccacattattaaaaaattgccgttatgtgccattatttgtctatttctaaaaacttatagtactggatttttattggattgcagACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTTGTCTTCCAG
species | Oryza sativa |
transcript | LOC_Os01g19150.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAG ACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTTEST: gi|117211748|gb|CT851732.1|CT851732
genomic: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAGgtactgacat ... tggattgcagACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTT
EST: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAG ACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTTEST: gi|29637277|gb|CB642286.1|CB642286
genomic: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAGgtactgacat ... tggattgcagACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTT
EST: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAG ACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTTEST: gi|29675685|gb|CB671960.1|CB671960
genomic: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAGgtactgacat ... tggattgcagACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTT
EST: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAG ACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTTEST: gi|29668963|gb|CB665238.1|CB665238
genomic: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAGgtactgacat ... tggattgcagACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTT
EST: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAG ACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTT
genomic: GTCACACTATTGTGACAACTGTTGGTGGAAGAAATGGGCAGCCAAAGCAGgtactgacat ... tggattgcagACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTT
ccattatttgtctatttctaaaaacttatagtactggatttttattggattgcagACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTTGTCTTCCAG
ttctaaa putative branch site (score: 2)
tttttatt putative PPT
tatttctaaaaactta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtactgacatagcattggtctatggtgatcactactatgtttgtactgtagtacttcatgttgcaatagatagaatttatgtggcaaacactaccacattattaaaaaattgccgttatgtgccattatttgtctatttctaaaaacttatagtactggatttttattggattgcagACAATTAGTTACATCGCAGAGCGTGCTGTTGGGCGTGGTTCATTTGGAGTTGTCTTCCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG