1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttattataatctattttttatcctgtttgttcattggtttatttacccatcacatctttaccgttgagtttctcaataatttcttgtttctaattgtagCTAGCTGATGCTAAGGATGTGATGGATGTAGTCCGGAATATTGAAGGTGTAAGCCTTCCTGTATTGACACCAAACCTTAAG
species | Oryza sativa |
transcript | LOC_Os01g16350.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TATCGGTTGTTGAGGCAACTAGTTTTGTCTCTCCAAAATGGGTACCACAG CTAGCTGATGCTAAGGATGTGATGGATGTAGTCCGGAATATTGAAGGTGTAEST: gi|218498139|gb|FG965531.1|FG965531
genomic: TATCGGTTGTTGAGGCAACTAGTTTTGTCTCTCCAAAATGGGTACCACAGgtaattttgg ... ctaattgtagCTAGCTGATGCTAAGGATGTGATGGATGTAGTCCGGAATATTGAAGGTGTA
EST: TATCGGTTGTTGAGGCAACTAGTTTTGTCTCTCCAAAATGGGTACCACAG CTAGCTGATGCTAAGGATGTGATGGATGTAGTCCGGAATATTGAAGGTGTA
genomic: TATCGGTTGTTGAGGCAACTAGTTTTGTCTCTCCAAAATGGGTACCACAGgtaattttgg ... ctaattgtagCTAGCTGATGCTAAGGATGTGATGGATGTAGTCCGGAATATTGAAGGTGTA
acccatcacatctttaccgttgagtttctcaataatttcttgtttctaattgtagCTAGCTGATGCTAAGGATGTGATGGATGTAGTCCGGAATATTGAAGGTGTAAGCCTTCCTGTATTGACACCAAACCTTAAG
ttctaat putative branch site (score: 12)
tttcttgtttct CT-rich tract
aataatttcttgtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattataatctattttttatcctgtttgttcattggtttatttacccatcacatctttaccgttgagtttctcaataatttcttgtttctaattgtagCTAGCTGATGCTAAGGATGTGATGGATGTAGTCCGGAATATTGAAGGTGTAAGCCTTCCTGTATTGACACCAAACCTTAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - -ctgtttg