1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gaaattattcataacttgaataatcacaccatgtggtgcaatgtgaatttcagcaataaatttctgttctgttggtgattttttttggggggtcatatagGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTT
species | Oryza sativa |
transcript | LOC_Os01g16340.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTG GGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTEST: gi|29660968|gb|CB657243.1|CB657243
genomic: CTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGgtattttctt ... ggtcatatagGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTT
EST: CTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTG GGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTEST: gi|88979388|gb|CI025890.1|CI025890
genomic: CTACGGCATATATTGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGgtattttctt ... ggtcatatagGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTT
EST: TGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTG GGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTT
genomic: TGAGAAGTCAAGCCCATTTCCAACTGATGGAAAGCTGgtattttctt ... ggtcatatagGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTT
aatttcagcaataaatttctgttctgttggtgattttttttggggggtcatatagGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTT
aataaatttctgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaaattattcataacttgaataatcacaccatgtggtgcaatgtgaatttcagcaataaatttctgttctgttggtgattttttttggggggtcatatagGGATGGTGGAGTACAGGTTTTTCGTATGGCCTGTGGATTGCTGCTCTAGTTGCATCTGGTTTTTCAGTTGTTCCAGTTGCATCACAGACCTGGAAGGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - cttgaat
- - - - - - - - - - - - - - - - gtggtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -caataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gttggtg