1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...tttagtttgttttaacttccattgtaagaagaaatagttgttcaaacaaatttgctagtaagagatcatgatataattgctttttaattgtattttgcagGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTGAAAG
species | Oryza sativa |
transcript | LOC_Os01g16330.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTEST: gi|58604468|gb|CK014996.1|CK014996
genomic: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGgtaagtgcct ... tattttgcagGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCT
EST: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTAGTTTATTCACTATCTCAGTATCA-TGCTTCTTGAGATCCTATCTEST: gi|29661709|gb|CB657984.1|CB657984
genomic: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGgtaagtgcct ... tattttgcagGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCT
EST: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTEST: gi|58671018|gb|CK059704.1|CK059704
genomic: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGgtaagtgcct ... tattttgcagGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCT
EST: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTEST: gi|58593333|gb|CF991641.1|CF991641
genomic: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGgtaagtgcct ... tattttgcagGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCT
EST: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCG GTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCT
genomic: TCTATTACTTCCGTGTTTTCGAGAGGCAGATAGGCTCTAACAAATACTCGgtaagtgcct ... tattttgcagGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCT
acaaatttgctagtaagagatcatgatataattgctttttaattgtattttgcagGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTGAAAG
ttttaat putative branch site (score: 17)
atgatataattgcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttagtttgttttaacttccattgtaagaagaaatagttgttcaaacaaatttgctagtaagagatcatgatataattgctttttaattgtattttgcagGTTTTTAGTTTATTCACTATCTCAGTATCATTGCTTCTTGAGATCCTATCTTTGGTTCTCCTGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - -gaagaaa
- - - - - - - - - - - - - - - - - - - - - -aaacaaa
- - - - - - - - - - - - - - - - - - - - - - - - - tttgcta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatgat