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gtaagaaatcactaagattcgttgtctttgtttatttgctaaccttgagaagttaaatgaaatattctttgtcctccgttctccacagTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGAAGGCCTATTGAAAGAGAGGCCTACTAAAGCAATTTTTATTGGTACTAGA
species | Oryza sativa |
transcript | LOC_Os01g15490.3 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCGAC TTATGGTTTGCCACTGGAAACTATCCACTCGGATTTTAAGTCTGGCCTAGAEST: gi|58691625|gb|CK080312.1|CK080312
genomic: CCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAACgtaagaaatc ... ttctccacagTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGA
EST: ACTGTCTCGAC TTATGGTTTGCCACTGGAAACTATCCACTCGGATTTTAAGTCTGGCCTAGAEST: gi|33793373|gb|CF322568.1|CF322568
genomic: ACTGTCTCAACgtaagaaatc ... ttctccacagTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGA
EST: CCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAAC TTATGGTTTGCCACTGGAAACTATCCGCTCGGATACGTTAAGTCTGGCCTAEST: gi|29670775|gb|CB667050.1|CB667050
genomic: CCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAACgtaagaaatc ... ttctccacagTTATGGTTTGCCACTGGAAACTATCCGCTCGGAT--TTTAAGTCTGGCCTA
EST: CCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAAC TTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGAEST: gi|33676529|gb|CF304768.1|CF304768
genomic: CCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAACgtaagaaatc ... ttctccacagTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGA
EST: CCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAAC TTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTACA
genomic: CCTTGTGCTTTCCCTGAAATCAACTCATTCACTTATGAAACTGTCTCAACgtaagaaatc ... ttctccacagTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGA
atttgctaaccttgagaagttaaatgaaatattctttgtcctccgttctccacagTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGAAGGCCTATTGAAAGAGAGGCCTACTAAAGCAATTTTTATTGGTACTAGA
tgctaac putative branch site (score: 23)
tattctttgtcctccg putative PPT
aagttaaatgaaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaatcactaagattcgttgtctttgtttatttgctaaccttgagaagttaaatgaaatattctttgtcctccgttctccacagTTATGGTTTGCCACTGGAAACTATCCGCTCGGATTTTAAGTCTGGCCTAGAAGGCCTATTGAAAGAGAGGCCTACTAAAGCAATTTTTATTGGTACTAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA