Sequence
atgc intronic sequence ATGC exonic sequence...cttattgggtgtcctactaaattggatctgtccctttttcatcatttgatcccttgaatactattatgtttttaatgttaaatgttctatttgtctgcagGCTCGTCCATTGTTCAAAGACCAAAGGAAATTTCCAAAGATGGCGGACCCCTCATTACACGGCCACTTCCCGAAAAGGGGTCTGTTCCAGGCTTTGGCTA
Basic information
species | Oryza sativa |
transcript | LOC_Os01g15470.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: LOC_Os01g15470.1 (Oryza sativa), 3'ss of exon 4
lower sequence: GRMZM2G074381_T01 (Zea mays), 3'ss of exon 4
-----cttattgggtgtcctactaaattggatctgtccctttttcatcatttgatcccttgaatactattatgtttttaatgttaaatgttctatttgtctgcagGCTCGTCCATTGTTCAAAGACCAAAGGAAATTTCCAAAGATGGCGGACCCCTCATTACACGGCCACTTCCCGAAAAGGGGTCTGTTCCAGGCTTTGGCTA
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tcaaaattattaccactgctactaga----acgtgaatcattatcgttgccatttacgttatatttcgtgaactaaacagcaccttatactg-atctgtgtacagGCTCGTCCATTGTTCAAAGACCAAAAGAAGTTTCGCAAGATGGCTGATCCTTCGTTGTGTGGCCGCTTCCCAAAGAGGGGTTTATTCCAGGCACTGGCTAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|25800162|gb|CA756123.1|CA756123EST: GAGCGCTTGACAGCAATCGGCCACCTGATGAACAAGACTTGGTTGCATGG GCTCGTCCATTGGTCAA-GACCAA-GGAAATTTCCAAA
genomic: GAGCGCTTGACAGCAATCGGCCACCTGATGAACAAGACTTGGTTGCATGGgtatgtttct ... ttgtctgcagGCTCGTCCATTGTTCAAAGACCAAAGGAAATTTCCAAA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ttgatcccttgaatactattatgtttttaatgttaaatgttctatttgtctgcagGCTCGTCCATTGTTCAAAGACCAAAGGAAATTTCCAAAGATGGCGGACCCCTCATTACACGGCCACTTCCCGAAAAGGGGTCTGTTCCAGGCTTTGGCTA
ttttaat putative branch site (score: 3)
ttctattt putative PPT
aatactattatgtttt TA-rich tract