1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...aacaacatatttttgaggctggtctatgataatatattgtcaaagtttttccagtatgttgtcaacatatgagtaatctaggatggcttgttctttgcagCTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACGCACGGCGCTTCTAGAATCAAGAAG
species | Oryza sativa |
transcript | LOC_Os01g15110.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAG CTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACGEST: gi|27578001|gb|CB000696.1|CB000696
genomic: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAGgtagtttgct ... ttctttgcagCTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACG
EST: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAG CTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACGEST: gi|29662791|gb|CB659066.1|CB659066
genomic: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAGgtagtttgct ... ttctttgcagCTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACG
EST: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAG CTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACGEST: gi|29662790|gb|CB659065.1|CB659065
genomic: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAGgtagtttgct ... ttctttgcagCTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACG
EST: TTCATTTTTCAAGCGGGCTTGCCACAAAG CTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACGEST: gi|5003970|gb|AU069119.1|AU069119
genomic: TTCATTTCTCAAGCGGGCTTGCCACAAAGgtagtttgct ... ttctttgcagCTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACG
EST: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTNCCACAAAG CTATAACTCGAEST: gi|218500481|gb|FG960261.1|FG960261
genomic: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAGgtagtttgct ... ttctttgcagCTATAACTCGA
EST: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAG CTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACG
genomic: AGAGAAGCTGCTTATGCACCCTTCATTTCTCAAGCGGGCTTGCCACAAAGgtagtttgct ... ttctttgcagCTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACG
tttttccagtatgttgtcaacatatgagtaatctaggatggcttgttctttgcagCTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACGCACGGCGCTTCTAGAATCAAGAAG
cttgttcttt CT-rich tract
aacatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaacatatttttgaggctggtctatgataatatattgtcaaagtttttccagtatgttgtcaacatatgagtaatctaggatggcttgttctttgcagCTATAACTCGAGCGAGGTGAACAATGGTGCTGATAAGTTGGCTGAGCAACGCACGGCGCTTCTAGAATCAAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- caacata
- - - - - - - - ggctggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atgttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggcttg