1 5' 3' | 2 5' 3' | 3 5' 3' |
...agcaatatgcgtaggttcagagagatgtttgttttcatttccaggttccttattgataatgccaaaatatagcttaacggttgtttttattgatctcaagGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAG
species | Oryza sativa |
transcript | LOC_Os01g14020.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAG GAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAAEST: gi|33675432|gb|CF303671.1|CF303671
genomic: ATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGgtggtacttt ... tgatctcaagGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAA
EST: ATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAG GAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAAEST: gi|55415564|gb|CV727940.1|CV727940
genomic: ATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGgtggtacttt ... tgatctcaagGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAA
EST: ATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAG GAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAAEST: gi|8860148|gb|AU097466.1|AU097466
genomic: ATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGgtggtacttt ... tgatctcaagGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAA
EST: ATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAG GAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAA
genomic: ATGCAAGGTCAGAGGCTAGGAAGGAGGAAGCTCGTAAACAGGAACTTGAGgtggtacttt ... tgatctcaagGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAA
ttccttattgataatgccaaaatatagcttaacggttgtttttattgatctcaagGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAG
tattgat putative branch site (score: 3)
tttttatt CT-rich tract
aaaatatagcttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agcaatatgcgtaggttcagagagatgtttgttttcatttccaggttccttattgataatgccaaaatatagcttaacggttgtttttattgatctcaagGAATTGAAACAACGGGAAGAGAGTTTATCTAAAGATTTGGAGGATCTTAAACTGAGGCTTGCTGAAATTGAGCACCTCGCTAAAGGACGAGGCCTTTCAG
agcaata
- - - - - - - - - - - - -tgtttgt
- - - - - - - - - - - - - - - - tttcatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gttgttt