1 5' 3' | 2 5' 3' | 3 5' 3' |
...caaatgcacttttagggcaagattattagtaccacttcctgtcactcaaacatgcatgttcgttagtattttgactaacttgtgttttctttgattaaagGTTTGTCTAAGGAGGGTGCTACCTCTGCGTGTGATAACCAGTTGGATGTAGGCATTTTGGATCTTTCAAATGTTCGCATTTTGGAGTTCTCTTCGCCTGC
species | Oryza sativa |
transcript | LOC_Os01g13810.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tcaaacatgcatgttcgttagtattttgactaacttgtgttttctttgattaaagGTTTGTCTAAGGAGGGTGCTACCTCTGCGTGTGATAACCAGTTGGATGTAGGCATTTTGGATCTTTCAAATGTTCGCATTTTGGAGTTCTCTTCGCCTGC
cttgtgttttcttt CT-rich tract
ttttctttgattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| caaatgcacttttagggcaagattattagtaccacttcctgtcactcaaacatgcatgttcgttagtattttgactaacttgtgttttctttgattaaagGTTTGTCTAAGGAGGGTGCTACCTCTGCGTGTGATAACCAGTTGGATGTAGGCATTTTGGATCTTTCAAATGTTCGCATTTTGGAGTTCTCTTCGCCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- aatgcac
- - - - - - - - - - - - - - - - - cttcctg
- - - - - - - - - - - - - - - - - - - - - - -tcaaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt